View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1331_low_24 (Length: 306)
Name: NF1331_low_24
Description: NF1331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1331_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 9e-73; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 58 - 235
Target Start/End: Original strand, 4529104 - 4529282
Alignment:
| Q |
58 |
actgagttatgatcatcttccgtcgtttctgaaaaaatgtttttat-attgttcattgtttcctaaaggttttgtgtttgaaaagaaaacactcattcag |
156 |
Q |
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||||||||||||||||||||| |||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4529104 |
actgagttatgatcatcttccatcgtttctaaaaaaatgttttgcttattgttcattgtttcctaaaggttttgtgtttgaaaagaaaacactcattcag |
4529203 |
T |
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| Q |
157 |
ttatgggcagctaaggggttcattcaaccatcaaatgatgttagacgcgtagaagatgttggccatgagtacttcatga |
235 |
Q |
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| T |
4529204 |
ttatgggcagctgaggggtttatccaaccatcaaatgatgttagacgtgtagaagatgttggccatgagtacttcatga |
4529282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 58 - 235
Target Start/End: Complemental strand, 4398789 - 4398611
Alignment:
| Q |
58 |
actgagttatgatcatcttccgtcgtttctgaaaaaatgttttta-tattgttcattgtttcctaaaggttttgtgtttgaaaagaaaacactcattcag |
156 |
Q |
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|||||||||||||||||||||||||||||||||||| || ||| ||||||||| ||||||| ||||||||| ||||||||||||| |||||||||||| |
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| T |
4398789 |
actgagttatgatcatcttccgtcgtttctgaaaaagtgctttgcctattgttcactgtttccaaaaggttttatgtttgaaaagaagacactcattcag |
4398690 |
T |
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| Q |
157 |
ttatgggcagctaaggggttcattcaaccatcaaatgatgttagacgcgtagaagatgttggccatgagtacttcatga |
235 |
Q |
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| T |
4398689 |
ttatgggtagctgaggggttcattcaacaatcaaatgatgttagacgtgtagaagatgttggtcatgagtacttcatga |
4398611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 58 - 235
Target Start/End: Original strand, 4497853 - 4498031
Alignment:
| Q |
58 |
actgagttatgatcatcttccgtcgtttctgaaaaaatgttttta-tattgttcattgtttcctaaaggttttgtgtttgaaaagaaaacactcattcag |
156 |
Q |
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|||||||||||||||||||||||||||||| ||||| || ||| ||||||||| ||||||| ||||||||| ||||||||||||| ||||| |||||| |
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| T |
4497853 |
actgagttatgatcatcttccgtcgtttctaaaaaagtgctttgcctattgttcactgtttccaaaaggttttatgtttgaaaagaagacactgattcag |
4497952 |
T |
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| Q |
157 |
ttatgggcagctaaggggttcattcaaccatcaaatgatgttagacgcgtagaagatgttggccatgagtacttcatga |
235 |
Q |
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||||||| |||| ||||||||||||||| |||||||||| ||||| | |||||||||||||| |||||||||||||||| |
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| T |
4497953 |
ttatgggtagctgaggggttcattcaacaatcaaatgatattagatgtgtagaagatgttggtcatgagtacttcatga |
4498031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 58 - 235
Target Start/End: Original strand, 4518913 - 4519091
Alignment:
| Q |
58 |
actgagttatgatcatcttccgtcgtttctgaaaaaatgttttta-tattgttcattgtttcctaaaggttttgtgtttgaaaagaaaacactcattcag |
156 |
Q |
| |
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||||||||||||||||||||| |||||||| ||||| || ||| ||||||||| ||||||| ||||||||| ||||||||||||| |||||||||||| |
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| T |
4518913 |
actgagttatgatcatcttccatcgtttctaaaaaagtgctttgcctattgttcactgtttccaaaaggttttatgtttgaaaagaagacactcattcag |
4519012 |
T |
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| Q |
157 |
ttatgggcagctaaggggttcattcaaccatcaaatgatgttagacgcgtagaagatgttggccatgagtacttcatga |
235 |
Q |
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||||||| |||| |||||||| |||||| |||||||||| ||||| | ||||||||| |||| |||||||||||||||| |
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| T |
4519013 |
ttatgggtagctgaggggttcgttcaacaatcaaatgatattagatgtgtagaagatattggtcatgagtacttcatga |
4519091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 4534611 - 4534551
Alignment:
| Q |
1 |
tgtaagcttatgcatccaataataagatgaacattctctatctcaccaaggtaatggactg |
61 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4534611 |
tgtaagcttatacatccaataataagatgaacattctctatctcaccaaggtaatgaactg |
4534551 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 8e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 58 - 235
Target Start/End: Original strand, 18046537 - 18046715
Alignment:
| Q |
58 |
actgagttatgatcatcttccgtcgtttctgaaaaaatgttttta-tattgttcattgtttcctaaaggttttgtgtttgaaaagaaaacactcattcag |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || ||| ||||||||| ||||||| ||||||||| ||||||||||||| |||||||||||| |
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| T |
18046537 |
actgagttatgatcatcttccgtcgtttctgaaaaagtgctttgcctattgttcactgtttccaaaaggttttatgtttgaaaagaagacactcattcag |
18046636 |
T |
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| Q |
157 |
ttatgggcagctaaggggttcattcaaccatcaaatgatgttagacgcgtagaagatgttggccatgagtacttcatga |
235 |
Q |
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||||||| |||| ||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
18046637 |
ttatgggtagctgaggggttcattcaacaatcaaatgatgttagacgtgtagaagatgttggtcatgagtacttcatga |
18046715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 58 - 235
Target Start/End: Complemental strand, 18034616 - 18034438
Alignment:
| Q |
58 |
actgagttatgatcatcttccgtcgtttctgaaaaaatgttttta-tattgttcattgtttcctaaaggttttgtgtttgaaaagaaaacactcattcag |
156 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||| || ||| ||||||||| ||||||| ||||||||| ||||||||||||| |||||||||||| |
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| T |
18034616 |
actgagttatgatcatcttccatcgtttctaaaaaagtgctttgcctattgttcactgtttccaaaaggttttatgtttgaaaagaagacactcattcag |
18034517 |
T |
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| Q |
157 |
ttatgggcagctaaggggttcattcaaccatcaaatgatgttagacgcgtagaagatgttggccatgagtacttcatga |
235 |
Q |
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||||||| |||| |||||||| |||||| |||||||||| ||||| | ||||||||| |||| |||||||||||||||| |
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| T |
18034516 |
ttatgggtagctgaggggttcgttcaacaatcaaatgatattagatgtgtagaagatattggtcatgagtacttcatga |
18034438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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