View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1331_low_27 (Length: 292)
Name: NF1331_low_27
Description: NF1331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1331_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 43363276 - 43363517
Alignment:
| Q |
1 |
tcacgccttgttattcattaaccaataaatttgatgataaattcttctaaatatgatttttcattttgtattttcaattgtttgtaccaaagcagagaaa |
100 |
Q |
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| T |
43363276 |
tcacgccttgttattcattaaccaataaatttgatgataaattcttctaaatatcatttttcattttgtattttcaattatttgtaccaaagcagagaaa |
43363375 |
T |
|
| Q |
101 |
ttgaaaagaaagttgaagaaattatggacaatggttcttcaattgtataannnnnnnacatgtacatacaaacacactaca-aagcaatcacattaagat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| || ||||||||||||||| |
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| T |
43363376 |
ttgaaaagaaagttgaagaaattatggacaatggttcttcaattgtatcatttttttacatgtacatacaaacacactacacaaacaatcacattaagat |
43363475 |
T |
|
| Q |
200 |
agaacagcattgtatggaatggccacttctgctgcccctatg |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
43363476 |
agaacagcattgtatggaatggccacttctgctgcccctatg |
43363517 |
T |
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