View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1331_low_3 (Length: 605)
Name: NF1331_low_3
Description: NF1331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1331_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 174 - 596
Target Start/End: Original strand, 4534762 - 4535182
Alignment:
| Q |
174 |
tctgtaggttgcttttaataacggtattgatctcgctggaaaccccagcagaatgacgtcgatgatggacaagatctcgacctttccatccttagatgct |
273 |
Q |
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| T |
4534762 |
tctgtaggttgcttttaatcaccgtattgatctcgcaggaaactcctgcagaatgacgttgatgacagacaagatctcgacctttccatccttagatgct |
4534861 |
T |
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| Q |
274 |
caacttattcattgctcaattttatttataaaaaatctgaatttatattcattgatagttccattcatttcttttgtagtgacatttgaatcatcaagag |
373 |
Q |
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| T |
4534862 |
caacttattcattgctcaattttatttataaaaaatctgaatttatattcattgatagttccattcatttcttttgtagtgacatttgaatcatcaagag |
4534961 |
T |
|
| Q |
374 |
atttttaatctattgttgagaagaacttttttgattagtttctcttttatctatgtaatattgtttgtgtgacttttatctactgtggttattcgatgat |
473 |
Q |
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| T |
4534962 |
atttttaatctattgttgagaagaacttttttgattagtttctcttttatctatgtaatattgtt--tgtgacttttatctactgtggttattcgatgat |
4535059 |
T |
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| Q |
474 |
tattagctaatgttgtgtaatggaactaaagttgattaaatggtatgtgttggacgatgactttatttggaagaagataatcatatttaaattatatatg |
573 |
Q |
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| T |
4535060 |
tattagctaatgttgtgtaatggaactaaagttgattaaatggtatgtgttggacgatgactttatttggaagaagataatcatatttaaattatatatg |
4535159 |
T |
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| Q |
574 |
aattacatcatatcttaagtatt |
596 |
Q |
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| T |
4535160 |
aattacatcatatcttaaatatt |
4535182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 4534587 - 4534672
Alignment:
| Q |
1 |
ttattattggatgcataagcttacaaataaaggaactgc--tttcttctttttgatgtataaacagtggtcagtaagatgattata |
84 |
Q |
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| T |
4534587 |
ttattattggatgtataagcttacaaataaaggaactgcttttttttttttttgatgcataaacagtggttaataagatgattata |
4534672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 407 - 591
Target Start/End: Original strand, 48867392 - 48867578
Alignment:
| Q |
407 |
attagtttctcttttatctatgtaatatt-gtttgtgtgacttttatctactgtggttattcgatgattattagctaatgttgtgtaatggaactaaagt |
505 |
Q |
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| T |
48867392 |
attagtttctcttttatctatgtaatatttgtttgtgtgacgttcaactaatatggttatttgatgattattagttaatgttgtgtaatggaactaaagt |
48867491 |
T |
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| Q |
506 |
tgattaaatggtatgtgttggacgatgac---tttatttggaagaagataatcatatttaaattatatatgaattacatcatatcttaa |
591 |
Q |
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| T |
48867492 |
cgagtaaaagtta--tattggtcgatgacttttttatttgaaaggagataatcatatttaaattatctatgaattacattatattttaa |
48867578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 335 - 505
Target Start/End: Original strand, 3975660 - 3975832
Alignment:
| Q |
335 |
cattcatttcttttgtagtgacatttgaa-tcatcaagagatttttaatctattgttgagaag-aacttttttgattagtttctcttttatctatgtaat |
432 |
Q |
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||||||||||||||||||| | |||| | | |||||||||| || ||||||||||||||||| || |||||||| || ||| ||||||||| ||| | | |
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| T |
3975660 |
cattcatttcttttgtagttaactttggagttatcaagagatgttgaatctattgttgagaagtaatttttttgactactttatcttttatcaatgaagt |
3975759 |
T |
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| Q |
433 |
at-tgtttgtgtgacttttatctactgtggttattcgatgattattagctaatgttgtgtaatggaactaaagt |
505 |
Q |
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| T |
3975760 |
atatgtttttgtgacttttaactaatgtggttatttg-ttattattggtcaatgttgtgtaatggaactaaagt |
3975832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 483 - 596
Target Start/End: Complemental strand, 21489900 - 21489786
Alignment:
| Q |
483 |
atgttgtgtaatggaactaaagttgattaaatggtatgtgttggacgatgacttt---atttggaagaagataatcatatttaaattatatatgaattac |
579 |
Q |
| |
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| T |
21489900 |
atgttgtgtaattgaactaaagtggactaaatggtatgt--tgttcgttgactttttgatttgtaataagatattcatatttaaattatctatgaattaa |
21489803 |
T |
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| Q |
580 |
atcatatcttaagtatt |
596 |
Q |
| |
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| T |
21489802 |
attatatcttaaatatt |
21489786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 291 - 435
Target Start/End: Complemental strand, 24062043 - 24061896
Alignment:
| Q |
291 |
aattttatttataaaaaatctgaatttatattcattgatagtt-ccattcatttcttttgtagtgacatttgaatc-atcaagagatttttaatctattg |
388 |
Q |
| |
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||||||||||| | |||| | |||||||||||||| ||| || ||||||||||||||| ||||| |||||| | | |||||||||| || ||||||||| |
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| T |
24062043 |
aattttatttactagaaatataaatttatattcattaatattttccattcatttcttttttagtggcatttggagccatcaagagatgttgaatctattg |
24061944 |
T |
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| Q |
389 |
ttgagaagaac-ttttttgattagtttctcttttatctatgtaatatt |
435 |
Q |
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|||| || ||| |||||| |||||||| || ||||| ||||||||||| |
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| T |
24061943 |
ttgaaaaaaacttttttttattagtttatcgtttatttatgtaatatt |
24061896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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