View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1331_low_30 (Length: 279)
Name: NF1331_low_30
Description: NF1331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1331_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 29159389 - 29159170
Alignment:
| Q |
1 |
atagccgccacattttcaccagaaagaccatccagaaccataggagagtcaatagccgctacattttctttgccatcgtgactttccttttcctcaatca |
100 |
Q |
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| T |
29159389 |
atagccgccacattttcaccagaaagaccatccagaaccataggagagtcaatagccgctacattttctttgccatcatgactttccttttcctcaatca |
29159290 |
T |
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| Q |
101 |
aacacaaagaagcgccttcagctatattctcaaccgaaacacgaaattcctctgatttgacagcatcagagacacaatccaaatcaccgcgaacaccatc |
200 |
Q |
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| T |
29159289 |
aacacaaagaagcgccttcagctatattctcaaccgaaacacgaaattcctctgatttgacagcatcagagacacaatccaaatcaccacgaacaccatc |
29159190 |
T |
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| Q |
201 |
aacttccatagacctatgct |
220 |
Q |
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|||||||||||||||||||| |
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| T |
29159189 |
aacttccatagacctatgct |
29159170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 29159421 - 29159373
Alignment:
| Q |
20 |
cagaaagaccatccagaaccataggagagtcaatagccgctacattttc |
68 |
Q |
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|||||| |||||| |||||||||||||||||||||||||| |||||||| |
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| T |
29159421 |
cagaaacaccatctagaaccataggagagtcaatagccgccacattttc |
29159373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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