View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1331_low_34 (Length: 270)

Name: NF1331_low_34
Description: NF1331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1331_low_34
NF1331_low_34
[»] chr3 (15 HSPs)
chr3 (11-243)||(6143196-6143428)
chr3 (13-243)||(13269513-13269744)
chr3 (13-221)||(6238566-6238774)
chr3 (15-243)||(6246185-6246413)
chr3 (15-228)||(6169801-6170014)
chr3 (71-243)||(6266568-6266740)
chr3 (71-221)||(6260071-6260221)
chr3 (124-243)||(7750978-7751097)
chr3 (142-219)||(6849828-6849905)
chr3 (97-222)||(6900977-6901102)
chr3 (97-208)||(6590356-6590467)
chr3 (145-226)||(8568000-8568081)
chr3 (123-243)||(6917999-6918119)
chr3 (172-225)||(6479025-6479078)
chr3 (151-223)||(8472463-8472535)
[»] scaffold0425 (1 HSPs)
scaffold0425 (142-219)||(12936-13013)
[»] chr7 (1 HSPs)
chr7 (157-240)||(6572356-6572439)


Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 243
Target Start/End: Complemental strand, 6143428 - 6143196
Alignment:
Q  11 cacagatcattttggttttgttcaattaattgatatcatggcagaggttgatgttggtcaggcatttctttcccttgtcattcaattgatttgtgagaag 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||    
T  6143428 cacagatcattttggttttgttcaattaattgatatcatggcagaggttgatgttggtagggcatttctttcccctgtcattcaattgatttgtgagaag 6143329  T
Q  111 ttaacttcaacatatttcagagactatttccatgaagggctggtgaaaaaacttgaaatcacactcaagtctatcaattatgtgctggatgacgcagaga 210  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6143328 ttaacttcaacagatttcagagactatttccatgaagggctggtgaaaaaacttgaaatcacactcaagtctatcaattatgtgctggatgacacagaga 6143229  T
Q  211 caaagcagtaccaaaatcaaaccgtgaagaatt 243  Q
    |||||||||||||||||||||||||||||||||    
T  6143228 caaagcagtaccaaaatcaaaccgtgaagaatt 6143196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 13 - 243
Target Start/End: Original strand, 13269513 - 13269744
Alignment:
Q  13 cagatcattttggttttgttcaattaat-tgatatcatggcagaggttgatgttggtcaggcatttctttcccttgtcattcaattgatttgtgagaagt 111  Q
    |||||||||||| |||||||||||   | | |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |    
T  13269513 cagatcattttgtttttgttcaatatctattatatcatggcagaggttgatgttggtcaggcatttctttcccctatcattcaattgatttgtgagaaat 13269612  T
Q  112 taacttcaacatatttcagagactatttccatgaagggctggtgaaaaaacttgaaatcacactcaagtctatcaattatgtgctggatgacgcagagac 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  13269613 taacttcaacatatttcagagactatttccatgaagggctggtgaaaaaacttgaaatcacactgaagtctatcaattatttgctggatgacgcagagac 13269712  T
Q  212 aaagcagtaccaaaatcaaaccgtgaagaatt 243  Q
     ||||||||||||||||||  |||| ||||||    
T  13269713 taagcagtaccaaaatcaacgcgtggagaatt 13269744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 6238774 - 6238566
Alignment:
Q  13 cagatcattttggttttgttcaattaattgatatcatggcagaggttgatgttggtcaggcatttctttcccttgtcattcaattgatttgtgagaagtt 112  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| ||||| |||    
T  6238774 cagatcattttgtttttgttcaattaattgatatcatggcagaggttgttgttggtcaggcatttctttcccctatcattcaattgatttatgagaggtt 6238675  T
Q  113 aacttcaacatatttcagagactatttccatgaagggctggtgaaaaaacttgaaatcacactcaagtctatcaattatgtgctggatgacgcagagaca 212  Q
    | |||||||| ||||||||||||| ||  |||| ||||| ||||||||||||||||||||||| |||||||||||| | ||||||||||||| |||||||    
T  6238674 agcttcaacagatttcagagactacttgaatgatgggctagtgaaaaaacttgaaatcacactgaagtctatcaataaagtgctggatgacgaagagaca 6238575  T
Q  213 aagcagtac 221  Q
     || |||||    
T  6238574 gagtagtac 6238566  T

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Target: chr3; HSP #4
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 6246413 - 6246185
Alignment:
Q  15 gatcattttggttttgttcaattaattgatatcatggcagaggttgatgttggtcaggcatttctttcccttgtcattcaattgatttgtgagaagttaa 114  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||| ||| ||||||||||||||  ||||||||||||||||||||||  |||     
T  6246413 gatcattttggttttgttgaattaattgatatcatggcagaggttgttgttcgtcgggcatttctttcccccgtcattcaattgatttgtgagagattag 6246314  T
Q  115 cttcaacatatttcagagactatttccatgaagggctggtgaaaaaacttgaaatcacactcaagtctatcaattatgtgctggatgacgcagagacaaa 214  Q
    |||||||| ||||||| |||||  ||||||||  ||| ||||||||||||||||||||| |    ||||||||| | |||||||||||||||||||||||    
T  6246313 cttcaacagatttcagtgactacctccatgaaaagcttgtgaaaaaacttgaaatcacattggtttctatcaatcaagtgctggatgacgcagagacaaa 6246214  T
Q  215 gcagtaccaaaatcaaaccgtgaagaatt 243  Q
    | ||||| | ||||||| |||||||||||    
T  6246213 gaagtacgagaatcaaaacgtgaagaatt 6246185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 15 - 228
Target Start/End: Complemental strand, 6170014 - 6169801
Alignment:
Q  15 gatcattttggttttgttcaattaattgatatcatggcagaggttgatgttggtcaggcatttctttcccttgtcattcaattgatttgtgagaagttaa 114  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||| ||| ||||||||||||||  ||||||||||||||||||||||  |||     
T  6170014 gatcattttggttttgttgaattaattgatatcatggcagaggttgttgttcgtcgggcatttctttcccccgtcattcaattgatttgtgagagattag 6169915  T
Q  115 cttcaacatatttcagagactatttccatgaagggctggtgaaaaaacttgaaatcacactcaagtctatcaattatgtgctggatgacgcagagacaaa 214  Q
    |||||||| |||| || ||||| |||||||||  ||  ||||||||||||||||||||| |    || |||||| | ||||| |||||||||||||||||    
T  6169914 cttcaacagatttgagtgactacttccatgaaaagcatgtgaaaaaacttgaaatcacattggtttcaatcaataaagtgcttgatgacgcagagacaaa 6169815  T
Q  215 gcagtaccaaaatc 228  Q
    ||||||| ||||||    
T  6169814 gcagtacgaaaatc 6169801  T

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Target: chr3; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 71 - 243
Target Start/End: Complemental strand, 6266740 - 6266568
Alignment:
Q  71 ggcatttctttcccttgtcattcaattgatttgtgagaagttaacttcaacatatttcagagactatttccatgaagggctggtgaaaaaacttgaaatc 170  Q
    |||||||||||||| | |||| |||  ||||||||||| |||| |||||||| ||||| ||| |||  ||| ||||| ||||| ||||||||||||||||    
T  6266740 ggcatttctttcccctatcatccaagagatttgtgagaggttatcttcaacagatttcggaggctacgtccgtgaagagctggggaaaaaacttgaaatc 6266641  T
Q  171 acactcaagtctatcaattatgtgctggatgacgcagagacaaagcagtaccaaaatcaaaccgtgaagaatt 243  Q
    |||||    ||||||||| | |||||||||||||||||||||||| ||||| | ||||||| |||||||||||    
T  6266640 acactggtttctatcaatcaagtgctggatgacgcagagacaaagaagtacgagaatcaaaacgtgaagaatt 6266568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 71 - 221
Target Start/End: Complemental strand, 6260221 - 6260071
Alignment:
Q  71 ggcatttctttcccttgtcattcaattgatttgtgagaagttaacttcaacatatttcagagactatttccatgaagggctggtgaaaaaacttgaaatc 170  Q
    |||||||||||||| ||| |||| |||||||||| |||  ||| |||||||| ||||||||||||| ||| |  ||||||| ||||| |||||||||| |    
T  6260221 ggcatttctttcccctgtgattcgattgatttgtaagagtttagcttcaacagatttcagagactacttcgacaaagggcttgtgaataaacttgaaacc 6260122  T
Q  171 acactcaagtctatcaattatgtgctggatgacgcagagacaaagcagtac 221  Q
    ||||| || | |||||||   || || ||||||||||||||||||||||||    
T  6260121 acactgaattttatcaatctagtactagatgacgcagagacaaagcagtac 6260071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 243
Target Start/End: Complemental strand, 7751097 - 7750978
Alignment:
Q  124 atttcagagactatttccatgaagggctggtgaaaaaacttgaaatcacactcaagtctatcaattatgtgctggatgacgcagagacaaagcagtacca 223  Q
    ||||||||||||| ||||||||| |||||  |||||||||||||||||||||  | ||||||||| | || |||||||| ||||| | |||| |||||||    
T  7751097 atttcagagactacttccatgaaaggctgtggaaaaaacttgaaatcacactagattctatcaatgaagtactggatgatgcagatataaaggagtacca 7750998  T
Q  224 aaatcaaaccgtgaagaatt 243  Q
    | | | || |||||||||||    
T  7750997 acaccgaaacgtgaagaatt 7750978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 219
Target Start/End: Original strand, 6849828 - 6849905
Alignment:
Q  142 atgaagggctggtgaaaaaacttgaaatcacactcaagtctatcaattatgtgctggatgacgcagagacaaagcagt 219  Q
    ||||||||||| |||||||||||||||||| ||| || ||||||||| | | ||||||||  ||||||||||||||||    
T  6849828 atgaagggctgctgaaaaaacttgaaatcaaactgaattctatcaatgaagagctggatgttgcagagacaaagcagt 6849905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 222
Target Start/End: Complemental strand, 6901102 - 6900977
Alignment:
Q  97 tgatttgtgagaagttaacttcaacatatttcagagactatttccatgaagggctggtgaaaaaacttgaaatcacactcaagtctatcaattatgtgct 196  Q
    |||||| ||||| |||| |||||||| ||| |||||| ||  |||||| ||   ||| |||||||||||||||||||||    ||||||||| | |||||    
T  6901102 tgatttttgagaggttagcttcaacagattgcagagattacgtccatgtagatgtggagaaaaaacttgaaatcacactggtttctatcaataaagtgct 6901003  T
Q  197 ggatgacgcagagacaaagcagtacc 222  Q
    |||||||||| || ||||||||||||    
T  6901002 ggatgacgcaaaggcaaagcagtacc 6900977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 208
Target Start/End: Original strand, 6590356 - 6590467
Alignment:
Q  97 tgatttgtgagaagttaacttcaacatatttcagagactatttccatgaagggctggtgaaaaaacttgaaatcacactcaagtctatcaattatgtgct 196  Q
    ||||| ||||||||||  |||| | | |||||||| |||| |||||||||  ||||  |||||||||||||||||||||  | ||||||||| | || ||    
T  6590356 tgattcgtgagaagttggcttctagagatttcagaaactacttccatgaaatgctgcggaaaaaacttgaaatcacactggattctatcaatgaagtact 6590455  T
Q  197 ggatgacgcaga 208  Q
    |||||| |||||    
T  6590456 ggatgaagcaga 6590467  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 226
Target Start/End: Original strand, 8568000 - 8568081
Alignment:
Q  145 aagggctggtgaaaaaacttgaaatcacactcaagtctatcaattatgtgctggatgacgcagagacaaagcagtaccaaaa 226  Q
    ||||| ||||| || |||||||||||||||| || ||||| ||| |  || ||||||| ||||| |||||||||||||||||    
T  8568000 aagggttggtggaagaacttgaaatcacacttaattctataaatcaattgttggatgatgcagaaacaaagcagtaccaaaa 8568081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 243
Target Start/End: Complemental strand, 6918119 - 6917999
Alignment:
Q  123 tatttcagagactatttccatgaagggctggtgaaaaaacttgaaatcacactcaagtctatcaattatgtgctggatgacgcagagacaaagcagtacc 222  Q
    |||||||||||||| ||| |||| ||| |||| ||||   ||||||||||| |  | ||||||||| | ||||| ||||| ||||||  |||||||||||    
T  6918119 tatttcagagactacttcgatgatgggttggttaaaatttttgaaatcacattggattctatcaatgaagtgcttgatgatgcagaggtaaagcagtacc 6918020  T
Q  223 aaaatcaaaccgtgaagaatt 243  Q
    |||| | |  |||||||||||    
T  6918019 aaaaccgagacgtgaagaatt 6917999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 6479025 - 6479078
Alignment:
Q  172 cactcaagtctatcaattatgtgctggatgacgcagagacaaagcagtaccaaa 225  Q
    ||||||| ||||||||  |||||||||| || ||||||| ||||||||||||||    
T  6479025 cactcaattctatcaaccatgtgctggaagaagcagagataaagcagtaccaaa 6479078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 8472535 - 8472463
Alignment:
Q  151 tggtgaaaaaacttgaaatcacactcaagtctatcaattatgtgctggatgacgcagagacaaagcagtacca 223  Q
    |||| |||||||| ||||||||| | || ||||||||| |  || ||||||| |||||||||||| |||||||    
T  8472535 tggttaaaaaactcgaaatcacattgaattctatcaatcaattgttggatgatgcagagacaaagaagtacca 8472463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 219
Target Start/End: Original strand, 12936 - 13013
Alignment:
Q  142 atgaagggctggtgaaaaaacttgaaatcacactcaagtctatcaattatgtgctggatgacgcagagacaaagcagt 219  Q
    ||||||||||| |||||||||||||||||| ||| || ||||||||| | | ||||||||  ||||||||||||||||    
T  12936 atgaagggctgctgaaaaaacttgaaatcaaactgaattctatcaatgaagagctggatgttgcagagacaaagcagt 13013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 240
Target Start/End: Original strand, 6572356 - 6572439
Alignment:
Q  157 aaaaacttgaaatcacactcaagtctatcaattatgtgctggatgacgcagagacaaagcagtaccaaaatcaaaccgtgaaga 240  Q
    ||||||||||||||||| | || ||||||||| |  || ||||||| ||||||||||| ||||||||||| | || ||||||||    
T  6572356 aaaaacttgaaatcacaatgaattctatcaatcaattgttggatgatgcagagacaaaacagtaccaaaacccaaacgtgaaga 6572439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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