View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1331_low_35 (Length: 269)
Name: NF1331_low_35
Description: NF1331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1331_low_35 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 30 - 269
Target Start/End: Complemental strand, 32935756 - 32935517
Alignment:
| Q |
30 |
ccattagaaatgcatgaagaataacattaaaacaacataatcaccgcaatatcatgtaaagcaatagtattttacatcttcagttaggtaagcgaaagct |
129 |
Q |
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| T |
32935756 |
ccattagaaatgcatgaagaataacattaaaacaacataatcaccgcactatcatgtaaagcaatagtattttacatcttcagttaggtaagcgaaagct |
32935657 |
T |
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| Q |
130 |
gaagtaacaaaaagtttcttttgtccactccctcctccaccattccatattccactgaaagtgcaactcgaatagggacatggatcattcactttaagaa |
229 |
Q |
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| T |
32935656 |
gaagtaacaaaaagtttcttttgtccactccctcctccaccattccatattccactgaaagtgcaactcgaatagggacatggatcattcactttaagaa |
32935557 |
T |
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| Q |
230 |
ccttaagaattatatctttgcattcatcaaagtttgagcc |
269 |
Q |
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| T |
32935556 |
ccttaagaattatctctttgcattcattaaagtttgagcc |
32935517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 89 - 269
Target Start/End: Complemental strand, 32927436 - 32927255
Alignment:
| Q |
89 |
agcaatagtattttacatcttcagttaggtaagcgaaagctgaagtaacaaaaag-tttcttttgtccactccctcctccaccattccatattccactga |
187 |
Q |
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| T |
32927436 |
agcaataatgttttacatcttcggttaagtaagcaaaagccgaagaaacaaaaagattttttttttccgcttcctcctccaccattccatatcccaccaa |
32927337 |
T |
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| Q |
188 |
aagtgcaactcgaatagggacatggatcattcactttaagaaccttaagaattatatctttgcattcatcaaagtttgagcc |
269 |
Q |
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| T |
32927336 |
aagtgcaattcgaatagggacatggatcattcactttaagaaccttaagagttatctctttgcattcatcaaagtttgagcc |
32927255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 154 - 269
Target Start/End: Complemental strand, 32943114 - 32942999
Alignment:
| Q |
154 |
ccactccctcctccaccattccatattccactgaaagtgcaactcgaatagggacatggatcattcactttaagaaccttaagaattatatctttgcatt |
253 |
Q |
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| T |
32943114 |
ccacttcctcctccaccgttccatatcccaccaaaactacatttcccataaggacatggatcattcactttaagtgccttaagaattatctctttgcatt |
32943015 |
T |
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| Q |
254 |
catcaaagtttgagcc |
269 |
Q |
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| T |
32943014 |
catcaaagttggagcc |
32942999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 253
Target Start/End: Complemental strand, 32924680 - 32924529
Alignment:
| Q |
102 |
tacatcttcagttaggtaagcgaaagctgaagtaacaaaaagtttcttttgtccactccctcctccaccattccatattccactgaaagtgcaactcgaa |
201 |
Q |
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||||||||||| ||||||| ||||| ||||| | |||||||| | | |||||||| |||||||||||| |||| ||||||| ||||||||| || | |
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| T |
32924680 |
tacatcttcagctaggtaaaagaaagatgaagcagcaaaaagtattctctgtccacttcctcctccaccactccaaattccaccaaaagtgcaattctga |
32924581 |
T |
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| Q |
202 |
tagggacatggatcattcactttaagaaccttaagaattatatctttgcatt |
253 |
Q |
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| T |
32924580 |
tagggacatggataattcaatttaagagcctcacgaactatctttttgcatt |
32924529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 205 - 263
Target Start/End: Complemental strand, 32950244 - 32950186
Alignment:
| Q |
205 |
ggacatggatcattcactttaagaaccttaagaattatatctttgcattcatcaaagtt |
263 |
Q |
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| T |
32950244 |
ggacatggatcattcactttaagtgccttaagaattatctctttgcattcatcaaagtt |
32950186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 252
Target Start/End: Complemental strand, 32912707 - 32912557
Alignment:
| Q |
102 |
tacatcttcagttaggtaagcgaaagctgaagtaacaaaaagtttcttttgtccactccctcctccaccattccatattccactgaaagtgcaactcgaa |
201 |
Q |
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| T |
32912707 |
tacatcttcaggtaggtaaaagaaagatgaagaagcaaaaaggtgtttctgtccatttccccctccgccattccaaattccaccaaaagtgcaattttga |
32912608 |
T |
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| Q |
202 |
tagggacatggatcattcactttaagaaccttaagaattatatctttgcat |
252 |
Q |
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| T |
32912607 |
tagggacatggatagttcaatttaagtgccttacgaattatctttttgcat |
32912557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 253
Target Start/End: Complemental strand, 11824986 - 11824870
Alignment:
| Q |
137 |
caaaaagtttcttttgtccactccctcctccaccattccatattccactgaaagtgcaactcgaatagggacatggatcattcactttaagaaccttaag |
236 |
Q |
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|||||||||| | |||||||| ||||||||||||||||| ||||||| ||||||||| || ||| |||||||||| ||||| ||||||| ||| | | |
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| T |
11824986 |
caaaaagttttctctgtccacttcctcctccaccattccaaattccaccaaaagtgcaattctgataaggacatggataattcaatttaagagcctgatg |
11824887 |
T |
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| Q |
237 |
aattatatctttgcatt |
253 |
Q |
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|| ||| | |||||||| |
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| T |
11824886 |
aactatctttttgcatt |
11824870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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