View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1331_low_37 (Length: 251)
Name: NF1331_low_37
Description: NF1331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1331_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 5181588 - 5181830
Alignment:
| Q |
1 |
tcaagaaatttggaaccgatgaagatggactgagccgcgtgattgtcacaagggctgaaaaggatttgagggacatcaaagaactgtactacaagagaaa |
100 |
Q |
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| T |
5181588 |
tcaagaaatttggaaccgatgaagatggactgagccgcgtgattgtcacaagggctgaaaaggatttgagggacatcaaagagctgtactacaagagaaa |
5181687 |
T |
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| Q |
101 |
cagtgttcatcttgaagatgaagtttccaaggaaacctcaggggactacaagaagttcatcctcactcttttggggaaacatgattaaagtaattgagct |
200 |
Q |
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| T |
5181688 |
cagtgttcatcttgaagatgaagtttccaaggaaacctcaggggactacaagaagttcatcctcactcttttggggaaacatgattaaagtaattgagtt |
5181787 |
T |
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| Q |
201 |
aagggcatatctataatgagtttgggttatgatggcctatgat |
243 |
Q |
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| T |
5181788 |
aagggcatatctataatgagtttgggttatgatggcttatgat |
5181830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 5217213 - 5217266
Alignment:
| Q |
67 |
tgagggacatcaaagaactgtactacaagagaaacagtgttcatcttgaagatg |
120 |
Q |
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| T |
5217213 |
tgagggacatcaaagagctgtcctacaagagaaacagtgttcatcttgaagatg |
5217266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 115
Target Start/End: Original strand, 5189556 - 5189661
Alignment:
| Q |
10 |
ttggaaccgatgaagatggactgagccgcgtgattgtcacaagggctgaaaaggatttgagggacatcaaagaactgtactacaagagaaacagtgttca |
109 |
Q |
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| T |
5189556 |
ttggaaccgatgaggatgcactcacccgtgtgattgtcactagggctgagaaggacttggaggacataaaaaaggtctattacaagagaaatagtgtcca |
5189655 |
T |
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| Q |
110 |
tcttga |
115 |
Q |
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||||| |
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| T |
5189656 |
acttga |
5189661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 197
Target Start/End: Complemental strand, 14173525 - 14173338
Alignment:
| Q |
10 |
ttggaaccgatgaagatggactgagccgcgtgattgtcacaagggctgaaaaggatttgagggacatcaaagaactgtactacaagagaaacagtgttca |
109 |
Q |
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| T |
14173525 |
ttggaaccgatgaggatggactgactcgtgtggtcgtgacaagagccgagaaagatctgaaggacatcaaagagctgtattataagagaaacagtgttca |
14173426 |
T |
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| Q |
110 |
tcttgaagatgaagtttccaaggaaacctcaggggactacaagaagttcatcctcactcttttggggaaacatgattaaagtaattga |
197 |
Q |
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| T |
14173425 |
ccttgaggatgcagtggcaaaggaaatttcaggagactacaagaagttcatccttaccttgttggggaagcaagattgaagtaattga |
14173338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 179
Target Start/End: Complemental strand, 14151857 - 14151688
Alignment:
| Q |
10 |
ttggaaccgatgaagatggactgagccgcgtgattgtcacaagggctgaaaaggatttgagggacatcaaagaactgtactacaagagaaacagtgttca |
109 |
Q |
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| T |
14151857 |
ttggaaccgatgaggatggactaacccgtgtggtgatcacaagggcggagaaagacttgaaggacatcaaagagctgtattacaagagaaatagtgttca |
14151758 |
T |
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| Q |
110 |
tcttgaagatgaagtttccaaggaaacctcaggggactacaagaagttcatcctcactcttttggggaaa |
179 |
Q |
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| T |
14151757 |
ccttgaggatacagtggctaaggaaatttctggagactacaagaagttcctccttactcttttggggaaa |
14151688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 14166408 - 14166316
Alignment:
| Q |
87 |
tactacaagagaaacagtgttcatcttgaagatgaagtttccaaggaaacctcaggggactacaagaagttcatcctcactcttttggggaaa |
179 |
Q |
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| T |
14166408 |
tactacaaaagaaacagtgttcttcttgagcatgttgtggccaaggaaacttcaggggattacaagaagtttcttctcactctcttggggaaa |
14166316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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