View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1331_low_39 (Length: 251)
Name: NF1331_low_39
Description: NF1331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1331_low_39 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 32935849 - 32935999
Alignment:
| Q |
1 |
cttgtgcattaaactttgaggatgtcaaatccacttatccacgacttacagaagcaaaacgtccatatgtatgtatggatctcttataccagcatgtgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32935849 |
cttgtgcattaaactttgaggatgtcaaatccacttatccacgacttacagaagcaaaacgtccatatgtatgtatggatctcttataccagcatgtgtt |
32935948 |
T |
|
| Q |
101 |
gctcgttcatggatttggtaggtttcttgcactatgaaataaatactattt |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32935949 |
gctcgttcatggatttggtaggtttcttgcactatgaaataaatactattt |
32935999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 32927670 - 32927794
Alignment:
| Q |
1 |
cttgtgcattaaactttgaggatgtcaaatccacttatccacgacttacagaagcaaaacgtccatatgtatgtatggatctcttataccagcatgtgtt |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||| ||||| ||||| || | ||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32927670 |
cttgtacattaaactttgaggatgtcaaatacacttacccacgtcttacggaggaaaagcgtccatatgtatgcatggatctcttataccagcatgtgtt |
32927769 |
T |
|
| Q |
101 |
gctcgttcatggatttggtaggttt |
125 |
Q |
| |
|
||||||| |||||||||||||||| |
|
|
| T |
32927770 |
gctcgtttgtggatttggtaggttt |
32927794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 32912864 - 32912991
Alignment:
| Q |
1 |
cttgtgcattaaactttgaggatgtcaaatccacttatccacgacttac--agaagcaaaacg-tccatatgtatgtatggatctcttataccagcatgt |
97 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| ||| | |||| | | | | |||||||||| |||||||| |||| ||| |||| |
|
|
| T |
32912864 |
cttgtgcattaaactttgaggatgccaaatccacttatccatttcttgctaagaaaaatatagcttcatatgtatgcatggatcttatatatcagtatgt |
32912963 |
T |
|
| Q |
98 |
gttgctcgttcatggatttggtaggttt |
125 |
Q |
| |
|
|||||||||| |||||||||||| |||| |
|
|
| T |
32912964 |
gttgctcgttgatggatttggtaagttt |
32912991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 32924912 - 32924972
Alignment:
| Q |
65 |
atatgtatgtatggatctcttataccagcatgtgttgctcgttcatggatttggtaggttt |
125 |
Q |
| |
|
||||||||| |||||||| |||| ||| | |||||||||||| |||||||||||| |||| |
|
|
| T |
32924912 |
atatgtatgcatggatcttatatatcagtacgtgttgctcgttgatggatttggtaagttt |
32924972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 11825232 - 11825293
Alignment:
| Q |
64 |
catatgtatgtatggatctcttataccagcatgtgttgctcgttcatggatttggtaggttt |
125 |
Q |
| |
|
|||||||||| |||||||| |||| ||| |||||||||||||| |||||||||||| |||| |
|
|
| T |
11825232 |
catatgtatgcatggatcttatatatcagtatgtgttgctcgttgatggatttggtaagttt |
11825293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 11825166 - 11825206
Alignment:
| Q |
1 |
cttgtgcattaaactttgaggatgtcaaatccacttatcca |
41 |
Q |
| |
|
||||||||||||| |||||||||| |||||||| ||||||| |
|
|
| T |
11825166 |
cttgtgcattaaattttgaggatgccaaatccagttatcca |
11825206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University