View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1331_low_40 (Length: 247)
Name: NF1331_low_40
Description: NF1331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1331_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 7387043 - 7386805
Alignment:
| Q |
1 |
aatatgagtattttcaagagtaccaaagtaggttaagtgctcttattggtgcatcacaagcaaagagtcgtgtgaatcaagcacttgttctcataactgt |
100 |
Q |
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| T |
7387043 |
aatatgagtattttcaagagtaccaaagtaggttaagtgctcttattggtgcatcacaagcaaagagtcgtgtgaatcaagcacttgttctcataactgt |
7386944 |
T |
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| Q |
101 |
tggtggcaatgattttgtgaataattactacttggtgccttattctgcaaggtctcgtcaatatccattacctgaatatgtcaagtatctcatttctgag |
200 |
Q |
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| T |
7386943 |
tggtggcaatgattttgtgaataactactacttggtgccttattctgcaaggtctcgtcaatatccattacctgaatatgtcaagtatctcatttctgag |
7386844 |
T |
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| Q |
201 |
taccaaaaacttttgcaggtaacaccctttaatgagaat |
239 |
Q |
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| T |
7386843 |
taccaaaaacttttgcaggtaacaccctttaatgagaat |
7386805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 203
Target Start/End: Original strand, 1808484 - 1808588
Alignment:
| Q |
99 |
gttggtggcaatgattttgtgaataattactacttggtgccttattctgcaaggtctcgtcaatatccattacctgaatatgtcaagtatctcatttctg |
198 |
Q |
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| T |
1808484 |
gttggaggcaatgattttgtaaacaactattaccttgtaccttcttcttcaaggtctcgccaatatccattaccacactatgtcaagtttctcatttgtg |
1808583 |
T |
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| Q |
199 |
agtac |
203 |
Q |
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| T |
1808584 |
agtac |
1808588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 90 - 157
Target Start/End: Original strand, 48101796 - 48101863
Alignment:
| Q |
90 |
ctcataactgttggtggcaatgattttgtgaataattactacttggtgccttattctgcaaggtctcg |
157 |
Q |
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| T |
48101796 |
ctcatcaccgttggtggtaacgattttgtaaacaattactacttggtgccttattccgcaaggtctcg |
48101863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 162
Target Start/End: Original strand, 48084416 - 48084498
Alignment:
| Q |
80 |
agcacttgttctcataactgttggtggcaatgattttgtgaataattactacttggtgccttattctgcaaggtctcgtcaat |
162 |
Q |
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| T |
48084416 |
agcactcgtactcatcactcttggtggcaatgattttgtcaacaactattatttggttcctttttcagcaagatctcgtcaat |
48084498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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