View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1331_low_5 (Length: 496)
Name: NF1331_low_5
Description: NF1331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1331_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 46 - 487
Target Start/End: Complemental strand, 17402774 - 17402332
Alignment:
| Q |
46 |
caacaaactctctaatgaaccttggtgcattatcggagacttcaatgaccgtttctcttcagaagataaacgcggcggccatcctcgaccatcatggctt |
145 |
Q |
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| T |
17402774 |
caacaaactcactaatgaaccttggagcattatcggagacttcaatgaccatttctcttcagaagataaacgcggcggccatcatcgaccatcatggctt |
17402675 |
T |
|
| Q |
146 |
attcgtggtttcaaaaacgcagtctttgattgtaatttgtagtatatgccc-tccttggttaccaatttacatggttcaagagtattggcacgtcgtctt |
244 |
Q |
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||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17402674 |
attcgtggtttcaaaaatgcagtctctgattgtaatttgtagtatatgcccctccttggttaccaatttacatggttcaagagtattggcacgtcgtctt |
17402575 |
T |
|
| Q |
245 |
cgaaagaagctctccttgagcgtgcacttgttacttcttcttggcaagtgctttatcctcatgcatctctccaaactctagtggctcctatctcagatca |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17402574 |
cgaaagaagctctccttgagcgtgcacttgttacttcttcttggcaagtgctttatcctcatgcatctctccaaactctagtggctcctatctcagatca |
17402475 |
T |
|
| Q |
345 |
cacctcgttgttattccaacttgaccccgtcccatggaggcagcctcactgcaatttccgtttcaacaattattggctccttgaacccgaacttattcac |
444 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
17402474 |
cacctcgttgttattcaaacttgaccccgtcccatggaggcagccccaccgcaatttccgtttcaacaattattggctccttgaaccagaacttattcac |
17402375 |
T |
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| Q |
445 |
cttgtcgagtaattgggaccattacccttcatccgatattatt |
487 |
Q |
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| T |
17402374 |
cttgtcgagtaattgggaccattacccttcatccgatattatt |
17402332 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 290
Target Start/End: Complemental strand, 27646843 - 27646753
Alignment:
| Q |
200 |
ttggttaccaatttacatggttcaagagtattggcacgtcgtcttcgaaagaagctctccttgagcgtgcacttgttacttcttcttggca |
290 |
Q |
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|||| ||||||||||| |||||||| |||||||| || | ||||| |||||||| | ||||| ||||| ||||| |||||||||||||| |
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| T |
27646843 |
ttggataccaatttacttggttcaaaagtattggtactgcctcttccaaagaagcacgtcttgatcgtgcccttgtcacttcttcttggca |
27646753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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