View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1331_low_6 (Length: 480)

Name: NF1331_low_6
Description: NF1331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1331_low_6
NF1331_low_6
[»] chr2 (4 HSPs)
chr2 (26-181)||(30259800-30259955)
chr2 (26-181)||(29448641-29448796)
chr2 (333-471)||(29448523-29448657)
chr2 (333-471)||(30259939-30260073)
[»] chr8 (2 HSPs)
chr8 (190-243)||(26706612-26706665)
chr8 (190-242)||(40736556-40736608)
[»] chr7 (1 HSPs)
chr7 (190-241)||(34249663-34249714)
[»] chr3 (1 HSPs)
chr3 (190-243)||(47158720-47158773)
[»] chr1 (1 HSPs)
chr1 (190-243)||(9452406-9452459)


Alignment Details
Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 26 - 181
Target Start/End: Original strand, 30259800 - 30259955
Alignment:
Q  26 atcaacaacttgctcaaatgtttaatggtatccaaagccatctagatcaaatttcatatcacaaacactaatgtgcatatataacaaaaatattcctatt 125  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30259800 atcaacaacttgctcaagtgtttaatggtatccaaagccatctagatcaaatttcatatcacaaacactaatgtgcatatataacaaaaatattcatatt 30259899  T
Q  126 ttttatgacaatcctaaaacttcatttggcttcattctagatgactcgttttttct 181  Q
    | | |||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  30259900 tctgatgacaatcctaaaacttcatttggcttcatattagatgactcgttttttct 30259955  T

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Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 26 - 181
Target Start/End: Complemental strand, 29448796 - 29448641
Alignment:
Q  26 atcaacaacttgctcaaatgtttaatggtatccaaagccatctagatcaaatttcatatcacaaacactaatgtgcatatataacaaaaatattcctatt 125  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  29448796 atcaacaacttgctcaagtgtttaatggtatccaaagtcatctagatcaaatttcatatcacagacactaatgtgcatatataacaaaaatattcatatt 29448697  T
Q  126 ttttatgacaatcctaaaacttcatttggcttcattctagatgactcgttttttct 181  Q
    | | |||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  29448696 tctgatgacaatcctaaaacttcatttggcttcatattagatgactcgttttttct 29448641  T

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Target: chr2; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 333 - 471
Target Start/End: Complemental strand, 29448657 - 29448523
Alignment:
Q  333 gatgactcgttttttcttgttttgtcaaagggtatattccaagattaattaaagaagggaaattgccaaatcacgaggcttctacacaaaaccaaaacaa 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    |||| |||||||||||||| | ||||||||||||| | || |||||||    
T  29448657 gatgactcgttttttcttgttttgtcaaagggtatattccaagattaa----agaaaggaaattgccaaattaggaggcttctacactacacaaaaacaa 29448562  T
Q  433 aatcaaaattgaccaaactaatagcacacacagtataat 471  Q
    |||||||||||||||||||||||||||||||||||||||    
T  29448561 aatcaaaattgaccaaactaatagcacacacagtataat 29448523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 333 - 471
Target Start/End: Original strand, 30259939 - 30260073
Alignment:
Q  333 gatgactcgttttttcttgttttgtcaaagggtatattccaagattaattaaagaagggaaattgccaaatcacgaggcttctacacaaaaccaaaacaa 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    |||| |||||||||||||| | ||||||||||||| | || ||||| |    
T  30259939 gatgactcgttttttcttgttttgtcaaagggtatattccaagattaa----agaaaggaaattgccaaattaggaggcttctacactacacaaaaacta 30260034  T
Q  433 aatcaaaattgaccaaactaatagcacacacagtataat 471  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  30260035 aatcaaaattgaccaaactaatagcacacgcagtataat 30260073  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 26706665 - 26706612
Alignment:
Q  190 cccaccctcctgaggggctccttcctctgctgcagacggatgaattaggaacgc 243  Q
    |||||||||| |||| |||||||||| |||||||| ||||||||||||||||||    
T  26706665 cccaccctccagaggagctccttcctttgctgcagtcggatgaattaggaacgc 26706612  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 40736608 - 40736556
Alignment:
Q  190 cccaccctcctgaggggctccttcctctgctgcagacggatgaattaggaacg 242  Q
    |||||||||| || |||||||||||| |||||||| |||||||||||||||||    
T  40736608 cccaccctccagatgggctccttcctttgctgcagtcggatgaattaggaacg 40736556  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 34249663 - 34249714
Alignment:
Q  190 cccaccctcctgaggggctccttcctctgctgcagacggatgaattaggaac 241  Q
    |||||||||| || |||||||||||| |||||||| |||||||| |||||||    
T  34249663 cccaccctccagacgggctccttcctttgctgcagtcggatgaactaggaac 34249714  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 47158773 - 47158720
Alignment:
Q  190 cccaccctcctgaggggctccttcctctgctgcagacggatgaattaggaacgc 243  Q
    |||||||||| || || ||||| ||| |||||||| ||||||||||||||||||    
T  47158773 cccaccctccagacggactcctccctttgctgcagtcggatgaattaggaacgc 47158720  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 243
Target Start/End: Original strand, 9452406 - 9452459
Alignment:
Q  190 cccaccctcctgaggggctccttcctctgctgcagacggatgaattaggaacgc 243  Q
    |||||||||| |||||| || ||||| |||||||  ||||||||||||||||||    
T  9452406 cccaccctccagaggggttcattcctttgctgcaatcggatgaattaggaacgc 9452459  T

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