View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1331_low_7 (Length: 459)
Name: NF1331_low_7
Description: NF1331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1331_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 89 - 293
Target Start/End: Original strand, 31456492 - 31456696
Alignment:
| Q |
89 |
agatgcgtgcccctatttctagaaaactatgcactctcagctccaatattctttcacatttacaaaacaatgcaaagaaaaacctttcatctatcaaaat |
188 |
Q |
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| T |
31456492 |
agatgcgtgcccctatttctagaaaactatgcactctcagctccaatattctttcacatttacaaaacaatgcaaagaaaaacctttcatctatcaaaat |
31456591 |
T |
|
| Q |
189 |
ttcacctcattatgaagaaacccatcaccattttcattctgacctgaacctatcaaccctcaaacacaatcatgttccacccccaggtactaaaaacaca |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31456592 |
ttcacctcattatgaagaaacccatcaccattttcattctgacctgaacctatcaaccctcaaacacaatcatgttccacccccaggtactaaaaacaca |
31456691 |
T |
|
| Q |
289 |
taaag |
293 |
Q |
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||||| |
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| T |
31456692 |
taaag |
31456696 |
T |
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