View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1331_low_8 (Length: 457)

Name: NF1331_low_8
Description: NF1331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1331_low_8
NF1331_low_8
[»] chr8 (3 HSPs)
chr8 (78-428)||(7950314-7950664)
chr8 (147-389)||(7941384-7941626)
chr8 (101-385)||(7946939-7947223)
[»] chr6 (4 HSPs)
chr6 (87-395)||(6785771-6786076)
chr6 (119-329)||(6802961-6803171)
chr6 (152-241)||(12837566-12837655)
chr6 (152-206)||(30635845-30635899)
[»] chr7 (4 HSPs)
chr7 (135-269)||(15129269-15129403)
chr7 (183-256)||(15107734-15107807)
chr7 (172-260)||(20460349-20460437)
chr7 (152-259)||(20472158-20472265)
[»] chr3 (6 HSPs)
chr3 (146-272)||(12110190-12110316)
chr3 (146-272)||(12123861-12123987)
chr3 (147-255)||(12128042-12128150)
chr3 (136-268)||(30157267-30157399)
chr3 (134-228)||(30056008-30056102)
chr3 (179-273)||(30079714-30079808)
[»] chr1 (1 HSPs)
chr1 (152-253)||(5951050-5951151)


Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 78 - 428
Target Start/End: Complemental strand, 7950664 - 7950314
Alignment:
Q  78 ggcaagaaatcttttatgagtccagggttagaggaaacattgaagaatactttgtatgcttcaaagttagaggaaaaacaccatccatgttcgatatcag 177  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  7950664 ggcaagaaatcttttatgagtccacggttagaggaaacattgaagaatacatcgtatgcttcaaagttagaggaaaaacaccatccatgttcgatatcag 7950565  T
Q  178 gattaggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgacataagtttggatgttcctcaaccatcttcataacagt 277  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7950564 gattaggataacgggcacaaaagcttccactttccttcttcgtgcaatcagcgtgagactgacataagttaggatgttcctcaaccatcttcataacagt 7950465  T
Q  278 tggagatgatggatttgtacaataacctccaactagataaacagggatgcaacgacaatcgctagaacgacatggtggcatctcaaatggtgaacaagca 377  Q
    |||||||||||||| ||||||||||||| |||||||   || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7950464 tggagatgatggatatgtacaataacctgcaactagtccaatagggatgcaacgacaatcgctagaacgacatggtggcatctcaaatggtgaacaagca 7950365  T
Q  378 cccgaacaatctgttgctccaaccttctttgtcggaaccaatgctgtaaat 428  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7950364 cccgaacaatctgttgctccaaccttcttcgtcggaaccaatgctgtaaat 7950314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 147 - 389
Target Start/End: Complemental strand, 7941626 - 7941384
Alignment:
Q  147 gaggaaaaacaccatccatgttcgatatcaggattaggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgacataagt 246  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||| ||||| ||||||||||    
T  7941626 gaggaaaaacaccatccatattcgatatcaggattaggataacgagcacaaaagctaccacttcctttcttcgtgcaatcagcatgagattgacataagt 7941527  T
Q  247 ttggatgttcctcaaccatcttcataacagttggagatgatggatttgtacaataacctccaactagataaacagggatgcaacgacaatcgctagaacg 346  Q
    | | ||||| ||||||||||||| | | ||||||||||||||||| |   || |  ||||||| |||   |||||| |||||||| ||   ||| ||| |    
T  7941526 tagcatgtttctcaaccatcttcgtgatagttggagatgatggatctacgcagtttcctccaattagtataacaggaatgcaacggcagctgcttgaagg 7941427  T
Q  347 acatggtggcatctcaaatggtgaacaagcacccgaacaatct 389  Q
    |||||||||||||||||| || ||||||  |||| ||||||||    
T  7941426 acatggtggcatctcaaacggcgaacaaatacccaaacaatct 7941384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 101 - 385
Target Start/End: Complemental strand, 7947223 - 7946939
Alignment:
Q  101 agggttagaggaaacattgaagaatactttgtatgcttcaaagttagaggaaaaacaccatccatgttcgatatcaggattaggataacgagcacaaaag 200  Q
    ||||||||||||||  |||||||||||||  | ||||| |   || ||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  7947223 agggttagaggaaatcttgaagaatacttcttgtgctttactatttgaggaaaaacaccatccatatttgatatcaggattaggataacgagcacaaaag 7947124  T
Q  201 ctcccactttccttcttcgtgcaatcagcgtgagactgacataagtttggatgttcctcaaccatcttcataacagttggagatgatggatttgtacaat 300  Q
    || |||||| | ||||||||||||||||| ||||| ||||||||||| | ||||| ||||||||||||| | | ||||||||||||||||| |   || |    
T  7947123 ctaccacttcctttcttcgtgcaatcagcatgagattgacataagttagcatgtttctcaaccatcttcgtgatagttggagatgatggatctacgcagt 7947024  T
Q  301 aacctccaactagataaacagggatgcaacgacaatcgctagaacgacatggtggcatctcaaatggtgaacaagcacccgaaca 385  Q
      |||||| ||||   ||  || ||||||||||| | ||| ||  ||||||||||||||| |||||| ||||||  |||||||||    
T  7947023 ttcctccagctagtacaagtggaatgcaacgacagttgcttgagggacatggtggcatctgaaatggcgaacaaatacccgaaca 7946939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 3e-58; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 87 - 395
Target Start/End: Original strand, 6785771 - 6786076
Alignment:
Q  87 tcttttatgagtccagggttagaggaaacattgaagaatactttgtatgcttcaaagttagaggaaaaacaccatccatgttcgatatcaggattaggat 186  Q
    |||||| | ||| ||| |||||||||||  ||||||||||| |    ||||||| ||||||||| |||| ||||||||| |||||||| |||||||||||    
T  6785771 tcttttgtaagttcagagttagaggaaatgttgaagaatacgtctcgtgcttcagagttagaggcaaaataccatccatattcgatattaggattaggat 6785870  T
Q  187 aacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgacataagtttggatgttcctcaaccatcttcataacagttggagatga 286  Q
    ||||||||||||| |||||||||| |||||| || |||||| | |||||||| ||||| || ||||||||||| ||||||||||||| || |   |||      
T  6785871 aacgagcacaaaaactcccacttttcttctttgtacaatcaacatgagactggcataaattaggatgttcctcgaccatcttcataatagat---gatat 6785967  T
Q  287 tggatttgtacaataacctccaactagataaacagggatgcaacgacaatcgctagaacgacatggtggcatctcaaatggtgaacaagcacccgaacaa 386  Q
    ||||||| | ||  ||||||||| |||   || |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||  |||||||||     
T  6785968 tggatttatgcagaaacctccaattagcgcaatagggatgcaacgacaatcgctagagcgacatggtggcatctcaaatggcgaacaaatacccgaacag 6786067  T
Q  387 tctgttgct 395  Q
    |||| ||||    
T  6786068 tctgctgct 6786076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 119 - 329
Target Start/End: Original strand, 6802961 - 6803171
Alignment:
Q  119 gaagaatactttgtatgcttcaaagttagaggaaaaacaccatccatgttcgatatcaggattaggataacgagcacaaaagctcccactttccttcttc 218  Q
    |||||||||||  | ||||| | ||||||||| |||||||||||||| |||||||||| |||||||||||||||| ||||| ||||||||| | ||||||    
T  6802961 gaagaatacttcttgtgctttagagttagaggcaaaacaccatccatattcgatatcaagattaggataacgagcgcaaaaactcccacttcctttcttc 6803060  T
Q  219 gtgcaatcagcgtgagactgacataagtttggatgttcctcaaccatcttcataacagttggagatgatggatttgtacaataacctccaactagataaa 318  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||  |  || |||||| |||||| | |||    
T  6803061 gtgcaatcagcatgagactgacataagttaggatgttcctcaaccatcttcataacagttggggatgatgcatgcgagcagtaacctacaactaaaaaaa 6803160  T
Q  319 cagggatgcaa 329  Q
     ||||||||||    
T  6803161 gagggatgcaa 6803171  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 152 - 241
Target Start/End: Original strand, 12837566 - 12837655
Alignment:
Q  152 aaaacaccatccatgttcgatatcaggattaggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgaca 241  Q
    ||||||||| |||| || | |||||| ||||||| ||||||| ||||||||||||||| |||||||  |||| ||| | |||||||||||    
T  12837566 aaaacaccagccatttttgttatcagaattaggagaacgagcgcaaaagctcccacttcccttcttgttgcattcatcatgagactgaca 12837655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 30635845 - 30635899
Alignment:
Q  152 aaaacaccatccatgttcgatatcaggattaggataacgagcacaaaagctccca 206  Q
    ||||||||| ||||||||| |||||  ||||| ||||||||| ||||||||||||    
T  30635845 aaaacaccaaccatgttcgttatcaaaattagaataacgagcgcaaaagctccca 30635899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 135 - 269
Target Start/End: Original strand, 15129269 - 15129403
Alignment:
Q  135 gcttcaaagttagaggaaaaacaccatccatgttcgatatcaggattaggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgag 234  Q
    ||||||| |||||||| ||||||||| |||||||||||||||| |||||||||||||||||| || |||||| || |||||||  |||||||   ||| |    
T  15129269 gcttcaacgttagaggtaaaacaccagccatgttcgatatcagaattaggataacgagcacagaaactcccatttcccttcttgatgcaatctatgtggg 15129368  T
Q  235 actgacataagtttggatgttcctcaaccatcttc 269  Q
    | ||||||||||| |||||||| || |||||||||    
T  15129369 attgacataagttgggatgttcttcgaccatcttc 15129403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 15107734 - 15107807
Alignment:
Q  183 ggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgacataagtttggatgttc 256  Q
    |||||||||||||| |||||||||||| |||| || ||||| ||  | ||||| ||||||| |||||| |||||    
T  15107734 ggataacgagcacagaagctcccacttccctttttggtgcattcgacatgagattgacataggtttgggtgttc 15107807  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 260
Target Start/End: Complemental strand, 20460437 - 20460349
Alignment:
Q  172 tatcaggattaggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgacataagtttggatgttcctca 260  Q
    ||||||||| | |||||||||| || ||||| ||| || |||||| |||||| ||| | || |||  ||||||||| ||||||||||||    
T  20460437 tatcaggatcaagataacgagcgcagaagcttccaattcccttctccgtgcattcaacatgtgacctacataagttaggatgttcctca 20460349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 259
Target Start/End: Complemental strand, 20472265 - 20472158
Alignment:
Q  152 aaaacaccatccatgttcgatatcaggattaggataacgagcacaaaagctcccactttccttcttc-gtgcaatcagcgtgagactgacataagtttgg 250  Q
    ||||||||| |||| |||  |||||| |||||||||||| ||||||||| |||||  |||||  ||| |||||||| |  ||||||||||| || ||| |    
T  20472265 aaaacaccagccatattcattatcagaattaggataacgcgcacaaaaggtccca-attcctctttctgtgcaatctgtatgagactgacaaaatttttg 20472167  T
Q  251 atgttcctc 259  Q
    |||||||||    
T  20472166 atgttcctc 20472158  T

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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 146 - 272
Target Start/End: Complemental strand, 12110316 - 12110190
Alignment:
Q  146 agaggaaaaacaccatccatgttcgatatcaggattaggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgacataag 245  Q
    ||||| ||||||||| |||| ||||| ||||| ||||| |||||||||||||||| |||||||| |||||||  |||| || || ||||  |||||||||    
T  12110316 agaggcaaaacaccacccatattcgacatcagcattagcataacgagcacaaaagttcccacttcccttcttgatgcactcggcatgagtttgacataag 12110217  T
Q  246 tttggatgttcctcaaccatcttcata 272  Q
    || ||||||||||| | ||||||||||    
T  12110216 ttaggatgttcctcgatcatcttcata 12110190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 146 - 272
Target Start/End: Complemental strand, 12123987 - 12123861
Alignment:
Q  146 agaggaaaaacaccatccatgttcgatatcaggattaggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgacataag 245  Q
    ||||| |||||||||||||| ||||||||||| ||||| |||||| ||||||||| | |||||| |||||||   ||| ||||| ||||  || ||||||    
T  12123987 agaggcaaaacaccatccatattcgatatcagcattagcataacgggcacaaaagtttccacttcccttcttgaagcattcagcatgagtttggcataag 12123888  T
Q  246 tttggatgttcctcaaccatcttcata 272  Q
    || ||||||||||| | ||||||||||    
T  12123887 ttaggatgttcctcgatcatcttcata 12123861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 147 - 255
Target Start/End: Complemental strand, 12128150 - 12128042
Alignment:
Q  147 gaggaaaaacaccatccatgttcgatatcaggattaggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgacataagt 246  Q
    |||| |||||||||||||| ||||||||||  ||||| |||||||||||||||| | |||||| |||||||  |||| || || ||||  ||||||||||    
T  12128150 gaggcaaaacaccatccatattcgatatcatcattagcataacgagcacaaaagtttccacttcccttcttgatgcactcggcatgagtttgacataagt 12128051  T
Q  247 ttggatgtt 255  Q
    | |||||||    
T  12128050 taggatgtt 12128042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 268
Target Start/End: Original strand, 30157267 - 30157399
Alignment:
Q  136 cttcaaagttagaggaaaaacaccatccatgttcgatatcaggattaggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgaga 235  Q
    ||||| || |||||| ||||||||| |||| || |||||||| ||||||| | ||||||||| |  |||||||  |||| || ||||| ||| | |||||    
T  30157267 cttcagagatagaggcaaaacaccagccatatttgatatcagaattaggaaagcgagcacaataattcccactacccttttttgtgcattcatcatgaga 30157366  T
Q  236 ctgacataagtttggatgttcctcaaccatctt 268  Q
    |  ||||||||| || |||||||||||| ||||    
T  30157367 ccaacataagttaggttgttcctcaaccttctt 30157399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 228
Target Start/End: Original strand, 30056008 - 30056102
Alignment:
Q  134 tgcttcaaagttagaggaaaaacaccatccatgttcgatatcaggattaggataacgagcacaaaagctcccactttccttcttcgtgcaatcag 228  Q
    ||||||| || |||||| ||||||||| |||| || |||||||| ||||| | |||||||||||||  |||||||  ||||||| ||||| ||||    
T  30056008 tgcttcagagatagaggcaaaacaccagccatatttgatatcagaattagcaaaacgagcacaaaaattcccactacccttctttgtgcattcag 30056102  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 273
Target Start/End: Original strand, 30079714 - 30079808
Alignment:
Q  179 attaggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgacataagtttggatgttcctcaaccatcttcataa 273  Q
    ||||||| |||||||||||||  |||||||  | ||||| ||||| |||| |||||  || |||||||| |||||||| |||||| |||| ||||    
T  30079714 attaggaaaacgagcacaaaaattcccactacctttctttgtgcattcagtgtgagtttggcataagttaggatgttcttcaaccttctttataa 30079808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 253
Target Start/End: Original strand, 5951050 - 5951151
Alignment:
Q  152 aaaacaccatccatgttcgatatcaggattaggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgacataagtttgga 251  Q
    ||||||||| ||||  || | |||| || ||||| || |||||||||||||||||||| |||| ||| |||| ||| | ||||| ||||||| ||| |||    
T  5951050 aaaacaccaaccataatcaacatcaagaataggagaatgagcacaaaagctcccacttcccttgttcatgcattcaacatgagagtgacatatgttagga 5951149  T
Q  252 tg 253  Q
    ||    
T  5951150 tg 5951151  T

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