View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1331_low_9 (Length: 447)
Name: NF1331_low_9
Description: NF1331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1331_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 174 - 435
Target Start/End: Original strand, 4534762 - 4535023
Alignment:
| Q |
174 |
tctgtaggttgcttttaataacggtattgatctcgctggaaaccccagcagaatgacgtcgatgatggacaagatctcgacctttccatccttagatgct |
273 |
Q |
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| T |
4534762 |
tctgtaggttgcttttaatcaccgtattgatctcgcaggaaactcctgcagaatgacgttgatgacagacaagatctcgacctttccatccttagatgct |
4534861 |
T |
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| Q |
274 |
caacttattcattgctcaattttatttataaaaaatctgaatttatattcattgatagttccattcatttcttttgtagtgacatttgaatcatcaagag |
373 |
Q |
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| T |
4534862 |
caacttattcattgctcaattttatttataaaaaatctgaatttatattcattgatagttccattcatttcttttgtagtgacatttgaatcatcaagag |
4534961 |
T |
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| Q |
374 |
atttttaatctattgttgagaagaacttttttgattagtttctcttttatctatgtaatatt |
435 |
Q |
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| T |
4534962 |
atttttaatctattgttgagaagaacttttttgattagtttctcttttatctatgtaatatt |
4535023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 4534587 - 4534672
Alignment:
| Q |
1 |
ttattattggatgcataagcttacaaataaaggaactgc--tttcttctttttgatgtataaacagtggtcagtaagatgattata |
84 |
Q |
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| T |
4534587 |
ttattattggatgtataagcttacaaataaaggaactgcttttttttttttttgatgcataaacagtggttaataagatgattata |
4534672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 291 - 435
Target Start/End: Complemental strand, 24062043 - 24061896
Alignment:
| Q |
291 |
aattttatttataaaaaatctgaatttatattcattgatagtt-ccattcatttcttttgtagtgacatttgaatc-atcaagagatttttaatctattg |
388 |
Q |
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| T |
24062043 |
aattttatttactagaaatataaatttatattcattaatattttccattcatttcttttttagtggcatttggagccatcaagagatgttgaatctattg |
24061944 |
T |
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| Q |
389 |
ttgagaagaac-ttttttgattagtttctcttttatctatgtaatatt |
435 |
Q |
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| T |
24061943 |
ttgaaaaaaacttttttttattagtttatcgtttatttatgtaatatt |
24061896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 424
Target Start/End: Original strand, 3975660 - 3975751
Alignment:
| Q |
335 |
cattcatttcttttgtagtgacatttgaa-tcatcaagagatttttaatctattgttgagaag-aacttttttgattagtttctcttttatc |
424 |
Q |
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| T |
3975660 |
cattcatttcttttgtagttaactttggagttatcaagagatgttgaatctattgttgagaagtaatttttttgactactttatcttttatc |
3975751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 407 - 435
Target Start/End: Original strand, 48867392 - 48867420
Alignment:
| Q |
407 |
attagtttctcttttatctatgtaatatt |
435 |
Q |
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| T |
48867392 |
attagtttctcttttatctatgtaatatt |
48867420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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