View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13320_high_4 (Length: 391)
Name: NF13320_high_4
Description: NF13320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13320_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 17 - 376
Target Start/End: Complemental strand, 55175065 - 55174706
Alignment:
| Q |
17 |
ctgtgtcattctttcactctagatgtcagcttttattgaatataaacaagtcaacacttatttaagcaaagtacaaataaaaaagataatgttacttgag |
116 |
Q |
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| T |
55175065 |
ctgtgtcattctttcactctagatgtcagcttttattgaatataaacaagtcaacacttatttaagcaaagtacaaataaaaaagataatgttacttgag |
55174966 |
T |
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| Q |
117 |
tttcggtgtttctttcccttacctgagcttcgagcatagatattttttccatgagctccgcattcttcttcctttccctttccaactcggctgaaatctg |
216 |
Q |
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| T |
55174965 |
tttcggtgtttctttcccttacctgagcttcgagcatagatattttttccatgagctccgcattcttcttcctttccctttccaactcggctgaaatctg |
55174866 |
T |
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| Q |
217 |
agcaacattgttgacattatctccattcacttcttgttctatatcacaaaatgtagaggcattgaccaaggtagcacaggattgatgttctaccattgag |
316 |
Q |
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| T |
55174865 |
agaaacatcgttgacattatctccattcacttcttgttctatatcacaaaatgtagaggcattgaccaaggtagcacaggattgatgttctaccattgag |
55174766 |
T |
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| Q |
317 |
gactaagcaattaattttatctgaaaatctctggttttggactggaaattaagtcaaatg |
376 |
Q |
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| T |
55174765 |
gactaagcaattaattttatctgaaaatctctggttttggactggaaattaagtcaaatg |
55174706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 96 - 223
Target Start/End: Complemental strand, 55178669 - 55178544
Alignment:
| Q |
96 |
aaaaagataatgttacttgagtttcggtgtttctttcccttacctgagcttcgagcatagatattttttccatgagctccgcattcttcttcctttccct |
195 |
Q |
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| T |
55178669 |
aaaaagataatgttac--gagtttcggtgtttctttcccttatctgagcttcgtgcattgatattttttccatgagctccgcatttttcagcctttccct |
55178572 |
T |
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| Q |
196 |
ttccaactcggctgaaatctgagcaaca |
223 |
Q |
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| T |
55178571 |
ttccaactccaatgaaatctcagcaaca |
55178544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 145 - 267
Target Start/End: Complemental strand, 50906856 - 50906734
Alignment:
| Q |
145 |
ttcgagcatagatattttttccatgagctccgcattcttcttcctttccctttccaactcggctgaaatctgagcaacattgttgac-attatctccatt |
243 |
Q |
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| T |
50906856 |
ttcgagcatcgatattttt-ccatgatctccacattcttctgcctttccctttccaactcggctgaaatacgagcaacaacgttgacaattatctccatt |
50906758 |
T |
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| Q |
244 |
cacttcttgttctatatcacaaaa |
267 |
Q |
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| T |
50906757 |
cgcttcttattctatgtcacaaaa |
50906734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 50906959 - 50906872
Alignment:
| Q |
20 |
tgtcattctttcactctagatgtcagcttttattgaatat-aaacaagtcaacacttatttaagcaaagtacaaataaaaaagataat |
106 |
Q |
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||||||||||||||||||||||| ||||||| |||| ||| ||| |||||||||||||||||| ||||||| ||||| ||||||||| |
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| T |
50906959 |
tgtcattctttcactctagatgttagcttttgttgattataaaatgagtcaacacttatttaagtaaagtacgaataagaaagataat |
50906872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 266 - 322
Target Start/End: Complemental strand, 50952849 - 50952792
Alignment:
| Q |
266 |
aatgtagaggcattgaccaa-ggtagcacaggattgatgttctaccattgaggactaa |
322 |
Q |
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| T |
50952849 |
aatgcagaggcattgaccaaaggtagcacatgattgatgttctaccattgaggactaa |
50952792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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