View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13320_high_5 (Length: 279)
Name: NF13320_high_5
Description: NF13320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13320_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 52543398 - 52543138
Alignment:
| Q |
1 |
tgctcttcaatggctcttacctcctcaaactttcaacaaaaaacacccttttgtctatactcaatgccaagccattcatgcccgttctgttttcccttgt |
100 |
Q |
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| T |
52543398 |
tgctcttcaatggctcttacctcctcaaactttcaacaaaaaacacccttttgtctatactcaatgccaagccattcatgcccgttctgttttcccttgt |
52543299 |
T |
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| Q |
101 |
caggacacaccagccattagggtttgttattctgcccggttgaatattcccaaagaattgacggctgtcatggctgcaaaacatgtggcgcgccgcgaat |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
52543298 |
caggacacaccagccattagggtttgttattcggcccggttgaatattcccaaagaattgacggctgttatggctgcaaaacatgtggcgctccgcgaat |
52543199 |
T |
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| Q |
201 |
cattggttgacgacgagtgttttgggaattcttggcaaggtagagtggtggaagagtttga |
261 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
52543198 |
cattggttgacgacgagtgttttgggaattcgtccaaaggtagagtggtggaagagtttga |
52543138 |
T |
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