View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13320_low_1 (Length: 556)
Name: NF13320_low_1
Description: NF13320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13320_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 16 - 542
Target Start/End: Original strand, 863517 - 864050
Alignment:
| Q |
16 |
tttgcataaggttgatcttcttgatcttcaatctatccaatctgttgtccatggttgccatggtgtgttccacacagcctcccccgtcaccgacaaccct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| ||||||||| |
|
|
| T |
863517 |
tttgcataaggttgatcttcttgatcttcaatctatccaatctgttgttcatggttgccatggtgtgttccacacagcctctcctgtcactgacaaccct |
863616 |
T |
|
| Q |
116 |
gtgagttattttcattgttttccattcgaaaatataa---catttataaagagcaac--ttataaggtaaattaatcattttatggaacatataatagga |
210 |
Q |
| |
|
|| || |||||| |||||||||||| | |||| ||| || || ||| | ||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
863617 |
gtaaggaattttctttgttttccatttgtaaatttaatttcacatagaaaatgtaacagttataaggtgaattaatcattttatggaacatataatagga |
863716 |
T |
|
| Q |
211 |
tgagatgttggagccagcagtgaatggaacaaagaatgtgattatagcgtctgcggaagcaaaagtgcgacgtgttgtgttcacttcatcgattggaacg |
310 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
863717 |
tgagatgttagagccagcagtgaatggaactaagaatgtgattatagcgtccgcggaagctaaagtgcgacgtgttgttttcacttcatcgattggaacg |
863816 |
T |
|
| Q |
311 |
gtctatatggacacaaatactagtagagatgttgtcgttgatgaatcatattggagtgatttagagcattgcaagaacaccaaggtttgattaattcact |
410 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
863817 |
gtctatatggacccaaatactagtagagatgttgtcgttgatgaatcatattggagtgatttagagcattgcaagaacaccaaggtttgattaattcact |
863916 |
T |
|
| Q |
411 |
atgttcgtcttgtgcagagatctggttattaattaattaggtgatgaataatttaaattattttt--tgtgtgcagaactggtattgttatgggaagaca |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
863917 |
ctgttcgtcttgtgcagagatctggttattaattaattaggtgatgaataatttaactttttttttgtgtgtgcagaactggtattgttatgggaagaca |
864016 |
T |
|
| Q |
509 |
gtggctgaacaatcagcatgggatatagcaaaag |
542 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
864017 |
gtggctgaacaatcagcatgggatatagcaaaag |
864050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 312 - 403
Target Start/End: Original strand, 854092 - 854182
Alignment:
| Q |
312 |
tctatatggacacaaatactagtagagatgttgtcgttgatgaatcatattggagtgatttagagcattgcaagaacaccaaggtttgatta |
403 |
Q |
| |
|
||||| ||||| ||||||| ||||| | |||||| ||| |||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
854092 |
tctatttggacccaaatacaagtagggttgttgtggtt-atgattcatattggagtgatttagaatattgcaagaacaccaaggtttgatta |
854182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 853981 - 854049
Alignment:
| Q |
53 |
caatctgttgtccatggttgccatggtgtgttccacacagcctcccccgtcaccgacaaccctgtgagt |
121 |
Q |
| |
|
|||||||| || |||| ||| |||||||| |||||||||||| || ||||||||||||||||||||| |
|
|
| T |
853981 |
caatctgtagttcatgcttgtcatggtgtactccacacagcctatcctgtcaccgacaaccctgtgagt |
854049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 396
Target Start/End: Original strand, 45242914 - 45243091
Alignment:
| Q |
219 |
tggagccagcagtgaatggaacaaagaatgtgattatagcgtctgcggaagcaaaagtgcgacgtgttgtgttcacttcatcgattggaacggtctatat |
318 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||| ||| |||||||||||| | || || || ||||| ||||| ||||| | |||||||| |
|
|
| T |
45242914 |
tggagccagcagtgaatggagcaaagaatgtgatcatagctggtgcagaagcaaaagtgaggcgcgtggttttcacatcatcaattggtgcagtctatat |
45243013 |
T |
|
| Q |
319 |
ggacacaaatactagtagagatgttgtcgttgatgaatcatattggagtgatttagagcattgcaagaacaccaaggt |
396 |
Q |
| |
|
|||| | |||| ||| ||||| | |||||||| || | ||||||||||| ||| ||||||||| |||||||| |
|
|
| T |
45243014 |
ggaccccaataggagtgttgatgtagaggttgatgagtcttgctggagtgatttggagttttgcaagaaaaccaaggt |
45243091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University