View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13320_low_10 (Length: 271)
Name: NF13320_low_10
Description: NF13320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13320_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 5 - 252
Target Start/End: Original strand, 4405482 - 4405720
Alignment:
| Q |
5 |
catcatcatcaacaacaacagaatcaaaacattgtttctacaggtttaggtttatcctttggtgatcaacaacatcaaagactacaattgctnnnnnnnn |
104 |
Q |
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| T |
4405482 |
catcatcatcaacaacaacagaatcaaaacattgtttctacaggtttaggtttatcctttggtgatcaacaacatcaaagactacaattgctacaacaac |
4405581 |
T |
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| Q |
105 |
nnnnnnnnnntgggtgtcattcctctcatttcttgtctctattgtcaaatggtttagcttcacaaatcaaacaacaaaaggatgaaattgaccaattcct |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4405582 |
aaca---------gtgtcattcctctcatttcttgtctctattgtcaaatggtttagcttcacaaatcaaacaacaaaaagatgaaattgaccaattcct |
4405672 |
T |
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| Q |
205 |
tcaagcccaggtacaattcttccatatgttaacaatttctggattagt |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4405673 |
tcaagcccaggtacaattcttccatatgttaacaatttctggattagt |
4405720 |
T |
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