View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13320_low_11 (Length: 241)

Name: NF13320_low_11
Description: NF13320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13320_low_11
NF13320_low_11
[»] chr4 (17 HSPs)
chr4 (19-235)||(1552924-1553140)
chr4 (29-107)||(1548729-1548807)
chr4 (121-230)||(1548583-1548692)
chr4 (126-215)||(12121631-12121720)
chr4 (121-215)||(1537941-1538035)
chr4 (121-215)||(55505279-55505373)
chr4 (114-215)||(1545597-1545698)
chr4 (126-215)||(1489535-1489624)
chr4 (126-215)||(1513578-1513667)
chr4 (123-211)||(640748-640836)
chr4 (114-154)||(6006151-6006191)
chr4 (112-214)||(546735-546837)
chr4 (121-215)||(1508177-1508271)
chr4 (114-154)||(3438798-3438838)
chr4 (115-171)||(7226101-7226157)
chr4 (114-152)||(7307684-7307722)
chr4 (114-154)||(370751-370791)
[»] chr3 (2 HSPs)
chr3 (114-209)||(514908-515003)
chr3 (114-214)||(51113956-51114056)
[»] chr8 (2 HSPs)
chr8 (114-154)||(32151125-32151165)
chr8 (54-111)||(18315515-18315572)
[»] chr2 (2 HSPs)
chr2 (37-108)||(45245389-45245460)
chr2 (121-209)||(44575675-44575763)
[»] chr1 (1 HSPs)
chr1 (122-154)||(43634029-43634061)
[»] chr5 (1 HSPs)
chr5 (65-111)||(12845345-12845391)


Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 1553140 - 1552924
Alignment:
Q  19 aaaaataacttacattgtaaagttcaaacttcagaagagtagttttggaatactagcaaacaagacatccttgatgcgagaagagttccctttgatggag 118  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1553140 aaaaataacttacattataaagttcaaacttcagaagagtagttttggaatactagcaaacaagacatccttgatgcgagaagagttccctttgatggag 1553041  T
Q  119 cagttatctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctcttagttgcaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1553040 cagttatctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctcttagttgcaa 1552941  T
Q  219 gcaattttcttcgacat 235  Q
    |||||||||| ||||||    
T  1552940 gcaattttctccgacat 1552924  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 1548807 - 1548729
Alignment:
Q  29 tacattgtaaagttcaaacttcagaagagtagttttggaatactagcaaacaagacatccttgatgcgagaagagttcc 107  Q
    |||||| || || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1548807 tacattttagaggtcaaacttcagaagagtagttttcgaatactagcaaacaagacatccttgatgcgagaagagttcc 1548729  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 121 - 230
Target Start/End: Complemental strand, 1548692 - 1548583
Alignment:
Q  121 gttatctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctcttagttgcaagc 220  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||| || || || || |||||||| |||||| || ||||| |||||| |||    
T  1548692 gttatctttctcaatgatggtcttgaaaataccaatgaagcgacaacatcatcatgcaattgaaaacaaccttccaaattaatttctctcagttgcgagc 1548593  T
Q  221 aattttcttc 230  Q
    | ||||||||    
T  1548592 agttttcttc 1548583  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 126 - 215
Target Start/End: Complemental strand, 12121720 - 12121631
Alignment:
Q  126 ctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctcttagttg 215  Q
    |||||||||||||||||||||||||| |||||| |||| |||||||  || ||||| |||||||  |||||||| |||||||||||||||    
T  12121720 ctttctcaatgatggccttgaaaatatcaatgaggcaagaacatcacaatgcacttgaagacaatatttcaaatcgatctctcttagttg 12121631  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 121 - 215
Target Start/End: Complemental strand, 1538035 - 1537941
Alignment:
Q  121 gttatctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctcttagttg 215  Q
    |||| |||||| || |||||||||||||||| |||||| | || |||||||| |||||||| || ||| | ||||||||||||||||||||||||    
T  1538035 gttaactttcttaacgatggccttgaaaatatcaatgaggtaagaacatcatcatccacttgaacacaccttttcaaattgatctctcttagttg 1537941  T

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Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 121 - 215
Target Start/End: Complemental strand, 55505373 - 55505279
Alignment:
Q  121 gttatctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctcttagttg 215  Q
    |||||||||||||||||||||||||||||||||| |||  ||||||||  |  || |||||||  |||||| ||||| |||||||||||||||||    
T  55505373 gttatctttctcaatgatggccttgaaaataccattgagtcaacaacactagtatgcactttatcacaaccgttcaagttgatctctcttagttg 55505279  T

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Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 114 - 215
Target Start/End: Original strand, 1545597 - 1545698
Alignment:
Q  114 tggagcagttatctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctcttagt 213  Q
    ||||||||||||  ||||||||||||||||||| ||||| ||| |||||| ||||| |  || |||||||  ||||||  ||||||||||| ||||||||    
T  1545597 tggagcagttatacttctcaatgatggccttgataatactaataaagcaataacattagcatgcactttatcacaacccctcaaattgatcactcttagt 1545696  T
Q  214 tg 215  Q
    ||    
T  1545697 tg 1545698  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 215
Target Start/End: Complemental strand, 1489624 - 1489535
Alignment:
Q  126 ctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctcttagttg 215  Q
    |||||| || |||||||||||||||| |||||| |||| |||||||| || ||||| |  |||   ||||||||||||||||||||||||    
T  1489624 ctttcttaacgatggccttgaaaatatcaatgaggcaagaacatcatcatgcacttgaccacacattttcaaattgatctctcttagttg 1489535  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 215
Target Start/End: Complemental strand, 1513667 - 1513578
Alignment:
Q  126 ctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctcttagttg 215  Q
    |||||| || |||||||||||||||| |||||| |||| |||||||  || |||||||  ||||  |||||||||||||||||| |||||    
T  1513667 ctttcttaacgatggccttgaaaatatcaatgaggcaagaacatcaccattcactttagaacaatatttcaaattgatctctctcagttg 1513578  T

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Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 211
Target Start/End: Original strand, 640748 - 640836
Alignment:
Q  123 tatctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctctta 211  Q
    |||||||||||||||||||||||||||||||| |||  |||| |||| |  || |||||||  |||||| || ||||||| ||||||||    
T  640748 tatctttctcaatgatggccttgaaaataccattgagtcaacgacattagcattcactttattacaaccctttaaattgacctctctta 640836  T

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Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 6006151 - 6006191
Alignment:
Q  114 tggagcagttatctttctcaatgatggccttgaaaatacca 154  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  6006151 tggagcagttatctttctcaatgatggccttgtaaatacca 6006191  T

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Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 214
Target Start/End: Original strand, 546735 - 546837
Alignment:
Q  112 gatggagcagttatctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctctta 211  Q
    ||||||||  ||||||||||||||||||||||| |||||| || |||||||||  ||| |  || |||||||  |||| |  | ||||||||||||||||    
T  546735 gatggagctattatctttctcaatgatggccttaaaaataacattgaagcaacggcattaacattcactttattacaagcccttaaattgatctctctta 546834  T
Q  212 gtt 214  Q
    |||    
T  546835 gtt 546837  T

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Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 121 - 215
Target Start/End: Complemental strand, 1508271 - 1508177
Alignment:
Q  121 gttatctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctcttagttg 215  Q
    ||||| |||||||| |||||||||||||||| |||||| |||| |||||||  |   || ||| ||| |  ||||||||||||||||||||||||    
T  1508271 gttatttttctcaacgatggccttgaaaatatcaatgaggcaagaacatcaccacgtaccttaggaccatatttcaaattgatctctcttagttg 1508177  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 3438838 - 3438798
Alignment:
Q  114 tggagcagttatctttctcaatgatggccttgaaaatacca 154  Q
    ||||||||||| |||||||||||||||| ||||||||||||    
T  3438838 tggagcagttacctttctcaatgatggctttgaaaatacca 3438798  T

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Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 7226157 - 7226101
Alignment:
Q  115 ggagcagttatctttctcaatgatggccttgaaaataccaatgaagcaacaacatca 171  Q
    |||||| |||||||||||||||||||||||||| | |||| ||| ||||||| ||||    
T  7226157 ggagcaattatctttctcaatgatggccttgaagaaaccattgaggcaacaatatca 7226101  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 152
Target Start/End: Original strand, 7307684 - 7307722
Alignment:
Q  114 tggagcagttatctttctcaatgatggccttgaaaatac 152  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  7307684 tggagcaattatctttctcaatgatggccttgaagatac 7307722  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 370751 - 370791
Alignment:
Q  114 tggagcagttatctttctcaatgatggccttgaaaatacca 154  Q
    |||||||  ||||||||| ||||||||||||||||||||||    
T  370751 tggagcaactatctttctgaatgatggccttgaaaatacca 370791  T

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Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 114 - 209
Target Start/End: Complemental strand, 515003 - 514908
Alignment:
Q  114 tggagcagttatctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctct 209  Q
    |||||||  |||||||||||||||||||||||||||||||| ||  |||||||||| || || |||||||  ||||||| | ||||||||||||||    
T  515003 tggagcaactatctttctcaatgatggccttgaaaataccattggggcaacaacattataatgcactttattacaacctcttaaattgatctctct 514908  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 214
Target Start/End: Complemental strand, 51114056 - 51113956
Alignment:
Q  114 tggagcagttatctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctcttagt 213  Q
    |||||| ||||| | ||||||||||||||||||||||| || ||| ||||||| || |  || |||||||| |||||| || ||||| ||||||||||||    
T  51114056 tggagctgttatttctctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatctctcttagt 51113957  T
Q  214 t 214  Q
    |    
T  51113956 t 51113956  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 32151125 - 32151165
Alignment:
Q  114 tggagcagttatctttctcaatgatggccttgaaaatacca 154  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  32151125 tggagcagttatctttctcaatgatggccttgaaaatacca 32151165  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 18315572 - 18315515
Alignment:
Q  54 agagtagttttggaatactagcaaacaagacatccttgatgcgagaagagttcccttt 111  Q
    ||||||||||  |||| |||||||||||| |||| |||| ||||||||||||||||||    
T  18315572 agagtagtttgagaatgctagcaaacaaggcatctttgacgcgagaagagttcccttt 18315515  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 45245460 - 45245389
Alignment:
Q  37 aaagttcaaacttcagaagagtagttttggaatactagcaaacaagacatccttgatgcgagaagagttccc 108  Q
    ||||||||||||| || |||| |||||  |||| |||||||||||| ||||||||| |||| ||||||||||    
T  45245460 aaagttcaaacttaagtagagcagtttcagaatgctagcaaacaaggcatccttgacgcgacaagagttccc 45245389  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 209
Target Start/End: Complemental strand, 44575763 - 44575675
Alignment:
Q  121 gttatctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctct 209  Q
    |||| ||||||||||||||||||||||| || ||| || |||| ||||||| ||| ||| |||  ||||  | ||||||||| ||||||    
T  44575763 gttaactttctcaatgatggccttgaaagtatcaacgaggcaagaacatcacgatgcacattatcacaatttctcaaattgagctctct 44575675  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 43634029 - 43634061
Alignment:
Q  122 ttatctttctcaatgatggccttgaaaatacca 154  Q
    |||||||||||||||||||||||||||||||||    
T  43634029 ttatctttctcaatgatggccttgaaaatacca 43634061  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 111
Target Start/End: Original strand, 12845345 - 12845391
Alignment:
Q  65 ggaatactagcaaacaagacatccttgatgcgagaagagttcccttt 111  Q
    |||||||||| ||||||| ||||| |||||| |||||||||||||||    
T  12845345 ggaatactagaaaacaaggcatccatgatgcaagaagagttcccttt 12845391  T

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