View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13320_low_14 (Length: 217)
Name: NF13320_low_14
Description: NF13320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13320_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 30769122 - 30768925
Alignment:
| Q |
1 |
tatgatacataacttcaatcattttcaagcatcctatttcagatatgcaataagatcaacacgttcctggggcttcttaggagcaggaaataccatcttc |
100 |
Q |
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| T |
30769122 |
tatgatacataacttcaatcattttcaagcatcctatttcagatatgcaataagatcaacacgttcctggggcttcttaagagcaggaaataccatcttc |
30769023 |
T |
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| Q |
101 |
gtatcgaggatatactacataagaatnnnnnnntaatacacaaatcagtgatgtatttaatcgaaataagctttcaaggttacctctcagtataatca |
198 |
Q |
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| T |
30769022 |
gtatcgaggatatactacataagaataaaaaaataatacacaaatcagtgatgtatttaatcgaaataagctttcaatgttacctctcagtataatca |
30768925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 99
Target Start/End: Complemental strand, 30772945 - 30772883
Alignment:
| Q |
37 |
tttcagatatgcaataagatcaacacgttcctggggcttcttaggagcaggaaataccatctt |
99 |
Q |
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| T |
30772945 |
tttcagatatgcaataagatcagcacgttcttgaggcttcttaagaccaggaaaaaccatctt |
30772883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 1793175 - 1793114
Alignment:
| Q |
38 |
ttcagatatgcaataagatcaacacgttcctggggcttcttaggagcaggaaataccatctt |
99 |
Q |
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||||||||||||||||||||| | ||||| ||||| ||||| || | |||||||||||||| |
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| T |
1793175 |
ttcagatatgcaataagatcagcgcgttcttggggtttctttagaccgggaaataccatctt |
1793114 |
T |
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