View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13320_low_15 (Length: 203)
Name: NF13320_low_15
Description: NF13320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13320_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 11321168 - 11320995
Alignment:
| Q |
19 |
agcaaccgcatcgccgtcgcaactcgtcggaaagaaagtgattaccgccatatcgaaatattcgatctcgaaacgaaaacgtttcagaaaataacatatt |
118 |
Q |
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| T |
11321168 |
agcaaccgcatcgccgtcgcaactcgtcggaaagaaagtgattaccgccatatcgaaatattcgatctcgaaacgaaaacgtttcagaaaataacatatt |
11321069 |
T |
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| Q |
119 |
cagtaaatcctgattttcatcactataatccatttgtttcacctgattcttgttacattggttaccacaggttc |
192 |
Q |
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| T |
11321068 |
cagtaaatcctgattttcatcactataatccatttgtttcacctgattcttgttacattggttaccaccggttc |
11320995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 11479189 - 11479016
Alignment:
| Q |
19 |
agcaaccgcatcgccgtcgcaactcgtcggaaagaaagtgattaccgccatatcgaaatattcgatctcgaaacgaaaacgtttcagaaaataacatatt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11479189 |
agcaaccgcatcgccgtcgcaactcgtcggaaagaaagtgattaccgccatatcgaaatattcgatctcgaaacgaaaacgtttcagaaaataacatatt |
11479090 |
T |
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| Q |
119 |
cagtaaatcctgattttcatcactataatccatttgtttcacctgattcttgttacattggttaccacaggttc |
192 |
Q |
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| T |
11479089 |
cagtaaatcctgattttcatcactataatccatttgtttcacctgattcttgttacattggttaccaccggttc |
11479016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 35 - 186
Target Start/End: Complemental strand, 11459755 - 11459604
Alignment:
| Q |
35 |
tcgcaactcgtcggaaagaaagtgattaccgccatatcgaaatattcgatctcgaaacgaaaacgtttcagaaaataacatattcagtaaatcctgattt |
134 |
Q |
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|||||||||| |||| ||||||||||| ||| || ||||| || ||| ||||||| || |||| || || ||||||||| | || |||| ||| |||| |
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| T |
11459755 |
tcgcaactcgccggagagaaagtgatttccgtcacatcgagattttcaatctcgagacacaaacattccaaaaaataacagaaacaataaaccctaattt |
11459656 |
T |
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| Q |
135 |
tcatcactataatccatttgtttcacctgattcttgttacattggttaccac |
186 |
Q |
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||| ||||||||||||||| | || | ||||||||||||| | ||||||||| |
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| T |
11459655 |
tcaccactataatccatttatctcccgtgattcttgttacctcggttaccac |
11459604 |
T |
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