View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13320_low_3 (Length: 457)
Name: NF13320_low_3
Description: NF13320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13320_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 17 - 434
Target Start/End: Complemental strand, 1411465 - 1411049
Alignment:
| Q |
17 |
atcatcaactgcttacaaaatgtgggaaacagttacaaacactaagagtaacattttgctattgggtaaataggaaatatataattttcattatcaaaag |
116 |
Q |
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| T |
1411465 |
atcatcaactgcttacaaaatgtgggaaacagttacaaacactaagagtaacattttgctattgggtaaataggaaatatataattttcattatcaaaag |
1411366 |
T |
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| Q |
117 |
tcattattaatttgttatgttgctagtctcccctctctaacaaaggagtttattttcttagtttctttccaactccaaaaagtactatagtttagatgga |
216 |
Q |
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| T |
1411365 |
tcattattaatttgttatgttgctagtctcccctctctaacaa-ggagtttattttcttagtttatttccaactccaaaaagtactatagtttagatgaa |
1411267 |
T |
|
| Q |
217 |
taatagttgttaaatgattatgaatcatgtttattccttgacaagtttgtatagaaattcttcctcagatttaatttcgcatccattttagttttaaata |
316 |
Q |
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| T |
1411266 |
taatagttgttaaatgattatgaatcatgtttattccttgacaagtttgtatagaaattcttcctcagatttaatttcgcatccattttaattttaaata |
1411167 |
T |
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| Q |
317 |
accaatacacaaatgataaatgctaggtcattaattaagcatgtggtcagaagttcaatctcatgtcactttaaattaataaataaatggttgaagagat |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
1411166 |
accaatacacaaatgataaatgctaggtcattaattaagcacgtggtcagaagtttaatctcatgtcactttaaattaataaataaatgatagaagagat |
1411067 |
T |
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| Q |
417 |
caatccttacaatagatc |
434 |
Q |
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| T |
1411066 |
caatccttacaatagatc |
1411049 |
T |
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