View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13320_low_4 (Length: 452)
Name: NF13320_low_4
Description: NF13320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13320_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 8 - 437
Target Start/End: Original strand, 45402928 - 45403357
Alignment:
| Q |
8 |
aagcaaaggcaacaaacccacctaagaaaacaacataccttgttccattagcaaacctagacttactcccaactttaatatctgctacgttagtcaccat |
107 |
Q |
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| T |
45402928 |
aagcaaaggcaacaaacccacctaagaaaacaacataccttgttccattagcaaacctagacttactcccaactttaatatctgctacgttagtcatcat |
45403027 |
T |
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| Q |
108 |
atccttgtccacaaaatcaccaataggagacaaagaagaagacaacgattcattctcatgctcatgttcatcctccaagtaacaaaaagacattgacctc |
207 |
Q |
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| T |
45403028 |
atccttgtccacaaaatcaccaataggagacaaagaagaagacaacgattcattctcatgctcatgttcatcctccaagtaacaaaaagacattgacctc |
45403127 |
T |
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| Q |
208 |
acttcatacttttgacctatgttgttgtcgttatcatcactctcactctccatggttgaatcaaaaagtcttcggcccttcaattttcctctctcaatag |
307 |
Q |
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| T |
45403128 |
acttcataattttgacctatgttgttgtcgttatcatcactctcactctccatggttgaatcaaaaagtcttcggcccttcaattttcctctctcaatag |
45403227 |
T |
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| Q |
308 |
cttctctacgttcttggagagtctctctagctgccacatcatgattcttccatgtttcttcttctgatgatgaagaatctctttgaagactaaacatgag |
407 |
Q |
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| T |
45403228 |
cttctctacgttcttggagagtctctctagctgccacatcatgattcttccatgtttcttcttctgatgatgaagaatctctttgaagactaaacatgag |
45403327 |
T |
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| Q |
408 |
ttctctaggagaaataatgctgttattaat |
437 |
Q |
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| T |
45403328 |
ttctctaggagaaataatgctgttattaat |
45403357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 45402087 - 45402124
Alignment:
| Q |
20 |
caaacccacctaagaaaacaacataccttgttccatta |
57 |
Q |
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| T |
45402087 |
caaaccaacctaagtaaacaacataccttgttccatta |
45402124 |
T |
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