View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13320_low_7 (Length: 330)
Name: NF13320_low_7
Description: NF13320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13320_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 35366068 - 35365766
Alignment:
| Q |
18 |
aacaagttctatggaaataagcataagaaatgcaacaaaagaagcaattgaaaaaataaatggatcaaaattggagtgcatttgcagtggacagagtggt |
117 |
Q |
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| T |
35366068 |
aacaagttctatggaaataagcataagaaatgcaacaaaagaagcaattgaaaaaataaatggatcaaaattggagtgcatttgcagtggacagagtggt |
35365969 |
T |
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| Q |
118 |
gcaaacagatcatgtcgacattgttttatgagacaagtctctagccagcttcaaaatgctggttttaacagtgccatttgtaatactaaatggataaatt |
217 |
Q |
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| T |
35365968 |
gcaaacagatcatgtcgacattgttttatgagacaagtctctagccagcttcagaatgctggttttaacagtgccatttgtaatactaaatggataaatt |
35365869 |
T |
|
| Q |
218 |
catataatcttccatcaggtaatttcacttgattaataatttttacactttaaagaatcattcaacatataatatttcttacaaatgcatgcatcttttt |
317 |
Q |
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|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35365868 |
catatactcttccatcaggtaatttcatttgattaataatttttacactttaaagaatcattcaacatataatatttcttacaaatgcatgcatcttttt |
35365769 |
T |
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| Q |
318 |
cat |
320 |
Q |
| |
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||| |
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| T |
35365768 |
cat |
35365766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 35374089 - 35373825
Alignment:
| Q |
18 |
aacaagttctatggaaataagcataagaaatgcaacaaaagaagcaattgaaaaaataaatggatcaaaattggagtgcatttgcagtggacagagtggt |
117 |
Q |
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|||||||||| | |||||||||||||| |||||||| |||||||||||||| ||||| || |||||||||| ||||| ||| ||| ||||||||||| |
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| T |
35374089 |
aacaagttctgttgaaataagcataaggaatgcaacgaaagaagcaattgaggaaatagatagatcaaaattagagtgttgttgtagtagacagagtggt |
35373990 |
T |
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| Q |
118 |
gcaaacagatcatgtcgacattgttttatgagacaagtctctagccagcttcaaaatgctggttttaacagtgccatttgtaatactaaatggataaatt |
217 |
Q |
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| | |||||| |||| | | ||||| |||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||| || || |
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| T |
35373989 |
gaagccagatcttgtccaaactgtttcatgagacaagtctctagctaccttcaaaatggtggttttaacagtgccatttgtaatactaaatggacaagtt |
35373890 |
T |
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| Q |
218 |
catataatcttccatcaggtaatttcacttgattaataatttttacactttaaagaatcattcaa |
282 |
Q |
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|| |||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||| |
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| T |
35373889 |
cacataatcttccatcaggtaatttaatttaattaataatttttacactttaaagaatcattcaa |
35373825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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