View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13321_low_1 (Length: 648)
Name: NF13321_low_1
Description: NF13321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13321_low_1 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 615; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 18 - 648
Target Start/End: Complemental strand, 11315056 - 11314426
Alignment:
| Q |
18 |
agaagggacccatctttctgctgactcagcaattctaccttgcgcttctcaatcacactagacaaatgttggtccacaaaagcaaggcttcggctcaagc |
117 |
Q |
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| T |
11315056 |
agaagggacccatctttctgctgactcagcaattctaccttgcgcttctcaatcacactagacaaatgttggtccacaaaagcaaggcttcggctcaagc |
11314957 |
T |
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| Q |
118 |
caacttccataccaagtccaagccatttcttcaccttccaaaacacctcaggtaatataaaccgctggagcgtggcttcagtggctcgatcaaaagcggc |
217 |
Q |
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| T |
11314956 |
caacttccataccaagtccaagccatttcttcaccttccaaaacacctcaggtaatataaaccgctggagcgtggcttcagtggctcgatcaaaagcggc |
11314857 |
T |
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| Q |
218 |
tgcaaaaccgttttcaggaagacccgtggcacacgtctgcgggtctcttccaaaagccaagccacaaatattgtcaaaagtgagccggagcatcacatct |
317 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11314856 |
tgcaaaaccgttttcaggcagacccgtggcacacgtctgcgggtctcttccaaaagccaagccacaaatattgtcaaaagtgagccggagcatcacatct |
11314757 |
T |
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| Q |
318 |
tgtagatccaccggctcaccttgcacctcagctttcttcaaaatcgtgcaaagtcggtccttaatggctcggctaacccatctagccatggcttggcgca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11314756 |
tgtagatccaccggctcaccttgcacctcagctttcttcaaaatcgtgcaaagtcgatccttaatggctcggctaacccatctagccatggcttggcgca |
11314657 |
T |
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| Q |
418 |
aagtacgcgtggtgaattccagcgcggctgtcttgcgctggaacacccacgtgttaccatcagagttaaagatcccatcacccaacaaatcatgaaacac |
517 |
Q |
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| T |
11314656 |
aagtacgcgtggtgaattccagcgcggctgtcttgcgctggaacacccacgtgttaccatcagagttaaagatcccatcacccaacaaatcatgaaacac |
11314557 |
T |
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| Q |
518 |
cgcttgccacgtcggccctttcgggtaactgtcgaaccgggtctttagtatatgctccaaattcctcgggtcgcacgtgacggtcacgagcccttgcttc |
617 |
Q |
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|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11314556 |
cgcttgccacgtcggccctttcgggtaattgtcgaaccgagtctttagtatatgctccaaattcctcgggtcgcacgtgacggtcacgagcccttgcttc |
11314457 |
T |
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| Q |
618 |
ttggctaaaaatgggattgcacagatgcagg |
648 |
Q |
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| T |
11314456 |
ttggctaaaaatgggattgcacagatgcagg |
11314426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 381 - 557
Target Start/End: Original strand, 41065966 - 41066142
Alignment:
| Q |
381 |
atggctcggctaacccatctagccatggcttggcgcaaagtacgcgtggtgaattccagcgcggctgtcttgcgctggaacacccacgtgttaccatcag |
480 |
Q |
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| T |
41065966 |
atggctcggctaacccatcgagccatggcttgtcgtagggtacgagtggtgaactctagtgctgcggttttacgctggaacagccacatgtcaccatctg |
41066065 |
T |
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| Q |
481 |
agttaaagatcccatcacccaacaaatcatgaaacaccgcttgccacgtcggccctttcgggtaactgtcgaaccgg |
557 |
Q |
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| T |
41066066 |
agttaaatataccttctccgagtaagtcatgaaacactgactgccatgttggaccttttgggtaattgtcgaaccgg |
41066142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 213
Target Start/End: Original strand, 41065728 - 41065798
Alignment:
| Q |
143 |
tttcttcaccttccaaaacacctcaggtaatataaaccgctggagcgtggcttcagtggctcgatcaaaag |
213 |
Q |
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| T |
41065728 |
tttcttcagcttccaaacaatctcaggtaatatgaatcggtggagtgtggcttcagtggcgcgatcaaaag |
41065798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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