View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13321_low_3 (Length: 380)

Name: NF13321_low_3
Description: NF13321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13321_low_3
NF13321_low_3
[»] chr4 (2 HSPs)
chr4 (1-232)||(4606103-4606334)
chr4 (273-318)||(23084107-23084152)
[»] chr7 (7 HSPs)
chr7 (273-319)||(32457185-32457231)
chr7 (260-319)||(41014000-41014059)
chr7 (273-319)||(584861-584907)
chr7 (273-319)||(1694395-1694441)
chr7 (273-319)||(15076155-15076201)
chr7 (258-319)||(27262576-27262637)
chr7 (259-319)||(41648642-41648702)
[»] chr8 (3 HSPs)
chr8 (271-319)||(45509629-45509677)
chr8 (273-319)||(1030771-1030817)
chr8 (273-319)||(38389881-38389927)
[»] chr1 (7 HSPs)
chr1 (263-319)||(4051445-4051500)
chr1 (273-319)||(1053297-1053343)
chr1 (273-319)||(31880247-31880293)
chr1 (273-319)||(50846456-50846502)
chr1 (273-319)||(51680857-51680903)
chr1 (274-319)||(33417941-33417986)
chr1 (271-319)||(35864763-35864811)
[»] chr3 (7 HSPs)
chr3 (260-319)||(31311343-31311402)
chr3 (271-318)||(43974007-43974054)
chr3 (273-319)||(43140527-43140573)
chr3 (273-319)||(43862531-43862577)
chr3 (273-319)||(45300874-45300920)
chr3 (273-318)||(34330772-34330817)
chr3 (263-319)||(8398893-8398949)
[»] scaffold2128 (1 HSPs)
scaffold2128 (273-319)||(612-658)
[»] chr5 (3 HSPs)
chr5 (273-319)||(24363046-24363092)
chr5 (266-318)||(6670814-6670866)
chr5 (271-319)||(27581877-27581925)
[»] chr2 (2 HSPs)
chr2 (273-311)||(43568935-43568973)
chr2 (274-318)||(32144589-32144633)


Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 4606334 - 4606103
Alignment:
Q  1 tttatttttatcatacagtattatattgttaaaattataatttaaattgaaattggaattaaaactataactttaatgcggaaatcgaactcttgtttga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4606334 tttatttttatcatacagtattatattgttaaaattataatttaaattgaaattggaattaaaactataactttaatgcggaaatcgaactcttgtttga 4606235  T
Q  101 gtgatagcttgctgagacatgggtattcactatgctagtgcattatcagttctctaaaattgttcatgatagaccaacgatggaaggagtcgagatagag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4606234 gtgatagcttgctgagacatgggtattcactatgctagtgcattatcagttctctaaaattgttcatgatagaccaacgatggatggagtcgagatagag 4606135  T
Q  201 gcggtggttaagggcccaaatggtaataaaag 232  Q
    ||||||||||||||||||||||||| ||||||    
T  4606134 gcggtggttaagggcccaaatggtactaaaag 4606103  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 318
Target Start/End: Complemental strand, 23084152 - 23084107
Alignment:
Q  273 ttaaatatgtttttgttccttatcaatattctaacttttcatttta 318  Q
    ||||||||||||||| ||||||| ||||||| ||||||| ||||||    
T  23084152 ttaaatatgtttttggtccttataaatattccaactttttatttta 23084107  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 319
Target Start/End: Complemental strand, 32457231 - 32457185
Alignment:
Q  273 ttaaatatgtttttgttccttatcaatattctaacttttcattttag 319  Q
    ||||||||||||||| ||||||| ||||| |||||||||||||||||    
T  32457231 ttaaatatgtttttggtccttataaatatactaacttttcattttag 32457185  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 319
Target Start/End: Complemental strand, 41014059 - 41014000
Alignment:
Q  260 atatattttaagattaaatatgtttttgttccttatcaatattctaacttttcattttag 319  Q
    |||||||||| | ||||||||||||||| ||||||| |||||  ||||||||| ||||||    
T  41014059 atatattttagggttaaatatgtttttggtccttataaatatattaacttttcgttttag 41014000  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 319
Target Start/End: Original strand, 584861 - 584907
Alignment:
Q  273 ttaaatatgtttttgttccttatcaatattctaacttttcattttag 319  Q
    ||||||||||||||| ||||||| |||||  ||||||||||||||||    
T  584861 ttaaatatgtttttggtccttataaatatattaacttttcattttag 584907  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 319
Target Start/End: Original strand, 1694395 - 1694441
Alignment:
Q  273 ttaaatatgtttttgttccttatcaatattctaacttttcattttag 319  Q
    ||||||||||||||| ||||||| ||||| |||| ||||||||||||    
T  1694395 ttaaatatgtttttggtccttataaatatactaatttttcattttag 1694441  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 319
Target Start/End: Original strand, 15076155 - 15076201
Alignment:
Q  273 ttaaatatgtttttgttccttatcaatattctaacttttcattttag 319  Q
    ||||||||||||||||||| ||| |||||  ||||||||||||||||    
T  15076155 ttaaatatgtttttgttccctataaatatgttaacttttcattttag 15076201  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 319
Target Start/End: Complemental strand, 27262637 - 27262576
Alignment:
Q  258 gtatatattttaagattaaatatgtttttgttccttatcaatattctaacttttcattttag 319  Q
    |||||||||||||| ||||||||| |||||||| |||| |||||   |||||||| ||||||    
T  27262637 gtatatattttaaggttaaatatgattttgttctttataaatataacaacttttcgttttag 27262576  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 319
Target Start/End: Complemental strand, 41648702 - 41648642
Alignment:
Q  259 tatatattttaagattaaatatgtttttgttccttatcaatattctaacttttcattttag 319  Q
    ||||||||||  | ||||||||||||||||||| ||| |||||   |||||||||||||||    
T  41648702 tatatatttttgggttaaatatgtttttgttccatataaatatgtcaacttttcattttag 41648642  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 319
Target Start/End: Original strand, 45509629 - 45509677
Alignment:
Q  271 gattaaatatgtttttgttccttatcaatattctaacttttcattttag 319  Q
    ||||||||||||||||| ||| ||| ||||| |||||||||||||||||    
T  45509629 gattaaatatgtttttggtccctataaatatactaacttttcattttag 45509677  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 319
Target Start/End: Original strand, 1030771 - 1030817
Alignment:
Q  273 ttaaatatgtttttgttccttatcaatattctaacttttcattttag 319  Q
    ||||||||||||||| ||||||| ||||| | |||||||||||||||    
T  1030771 ttaaatatgtttttgatccttataaatataccaacttttcattttag 1030817  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 319
Target Start/End: Complemental strand, 38389927 - 38389881
Alignment:
Q  273 ttaaatatgtttttgttccttatcaatattctaacttttcattttag 319  Q
    ||||||||||||||| ||||||| ||||| |||||||||| ||||||    
T  38389927 ttaaatatgtttttgatccttataaatatactaacttttcgttttag 38389881  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 319
Target Start/End: Complemental strand, 4051500 - 4051445
Alignment:
Q  263 tattttaagattaaatatgtttttgttccttatcaatattctaacttttcattttag 319  Q
    ||||||||| ||||||||||||||| ||||||| ||||| |||||||||| ||||||    
T  4051500 tattttaag-ttaaatatgtttttggtccttataaatatactaacttttcgttttag 4051445  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 319
Target Start/End: Original strand, 1053297 - 1053343
Alignment:
Q  273 ttaaatatgtttttgttccttatcaatattctaacttttcattttag 319  Q
    ||||||||||||||| ||||||| ||||| |||||||||| ||||||    
T  1053297 ttaaatatgtttttggtccttataaatatactaacttttcgttttag 1053343  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 319
Target Start/End: Original strand, 31880247 - 31880293
Alignment:
Q  273 ttaaatatgtttttgttccttatcaatattctaacttttcattttag 319  Q
    ||||||||||||||| ||||||| ||||| | |||||||||||||||    
T  31880247 ttaaatatgtttttggtccttataaatataccaacttttcattttag 31880293  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 319
Target Start/End: Original strand, 50846456 - 50846502
Alignment:
Q  273 ttaaatatgtttttgttccttatcaatattctaacttttcattttag 319  Q
    ||||||||||||||| |||||||  |||| |||||||||||||||||    
T  50846456 ttaaatatgtttttggtccttatagatatactaacttttcattttag 50846502  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 319
Target Start/End: Original strand, 51680857 - 51680903
Alignment:
Q  273 ttaaatatgtttttgttccttatcaatattctaacttttcattttag 319  Q
    ||||||||||||||| ||||||| ||||| | |||||||||||||||    
T  51680857 ttaaatatgtttttgatccttataaatataccaacttttcattttag 51680903  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 319
Target Start/End: Complemental strand, 33417986 - 33417941
Alignment:
Q  274 taaatatgtttttgttccttatcaatattctaacttttcattttag 319  Q
    |||||||||||||| ||||||| ||||| |||||||||| ||||||    
T  33417986 taaatatgtttttgatccttataaatatgctaacttttcgttttag 33417941  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 319
Target Start/End: Complemental strand, 35864811 - 35864763
Alignment:
Q  271 gattaaatatgtttttgttccttatcaatattctaacttttcattttag 319  Q
    ||||||||||||||||| ||||||| ||||| | |||||||| ||||||    
T  35864811 gattaaatatgtttttggtccttataaatataccaacttttcgttttag 35864763  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 319
Target Start/End: Complemental strand, 31311402 - 31311343
Alignment:
Q  260 atatattttaagattaaatatgtttttgttccttatcaatattctaacttttcattttag 319  Q
    |||||||||| | ||||||||||||||| ||| ||| ||||| | |||||||||||||||    
T  31311402 atatattttagggttaaatatgtttttggtccctataaatatacaaacttttcattttag 31311343  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 43974007 - 43974054
Alignment:
Q  271 gattaaatatgtttttgttccttatcaatattctaacttttcatttta 318  Q
    ||||||||||||||||| ||||||| ||||| | ||||||||||||||    
T  43974007 gattaaatatgtttttggtccttataaatataccaacttttcatttta 43974054  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 319
Target Start/End: Original strand, 43140527 - 43140573
Alignment:
Q  273 ttaaatatgtttttgttccttatcaatattctaacttttcattttag 319  Q
    ||||||||||||||| ||| ||| ||||| |||||||||||||||||    
T  43140527 ttaaatatgtttttggtccctataaatatactaacttttcattttag 43140573  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 319
Target Start/End: Original strand, 43862531 - 43862577
Alignment:
Q  273 ttaaatatgtttttgttccttatcaatattctaacttttcattttag 319  Q
    ||||||||||||||| ||||||| ||||| | |||||||||||||||    
T  43862531 ttaaatatgtttttggtccttataaatataccaacttttcattttag 43862577  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 319
Target Start/End: Original strand, 45300874 - 45300920
Alignment:
Q  273 ttaaatatgtttttgttccttatcaatattctaacttttcattttag 319  Q
    ||||||||||||||| ||| ||| |||||||||||||||| ||||||    
T  45300874 ttaaatatgtttttgatccctataaatattctaacttttcgttttag 45300920  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 34330772 - 34330817
Alignment:
Q  273 ttaaatatgtttttgttccttatcaatattctaacttttcatttta 318  Q
    ||||||||||||||||||||||| ||||| | |||||||| |||||    
T  34330772 ttaaatatgtttttgttccttataaatatacaaacttttcgtttta 34330817  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 319
Target Start/End: Original strand, 8398893 - 8398949
Alignment:
Q  263 tattttaagattaaatatgtttttgttccttatcaatattctaacttttcattttag 319  Q
    ||||||| | ||||||||||||||| ||||||| ||||| | |||||||| ||||||    
T  8398893 tattttagggttaaatatgtttttggtccttataaatatgccaacttttcgttttag 8398949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2128 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold2128
Description:

Target: scaffold2128; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 319
Target Start/End: Original strand, 612 - 658
Alignment:
Q  273 ttaaatatgtttttgttccttatcaatattctaacttttcattttag 319  Q
    ||||||||||||||| ||||||| ||||| | |||||||||||||||    
T  612 ttaaatatgtttttggtccttataaatataccaacttttcattttag 658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 319
Target Start/End: Complemental strand, 24363092 - 24363046
Alignment:
Q  273 ttaaatatgtttttgttccttatcaatattctaacttttcattttag 319  Q
    ||||||||||||||| ||| ||| ||||| |||||||||||||||||    
T  24363092 ttaaatatgtttttggtccatataaatatactaacttttcattttag 24363046  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 318
Target Start/End: Complemental strand, 6670866 - 6670814
Alignment:
Q  266 tttaagattaaatatgtttttgttccttatcaatattctaacttttcatttta 318  Q
    |||||||||||||||||||||  ||||||| ||||| | || |||||||||||    
T  6670866 tttaagattaaatatgttttttatccttataaatatacaaagttttcatttta 6670814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 319
Target Start/End: Complemental strand, 27581925 - 27581877
Alignment:
Q  271 gattaaatatgtttttgttccttatcaatattctaacttttcattttag 319  Q
    ||||||||||||||||||||| ||| ||||| | |||||||| ||||||    
T  27581925 gattaaatatgtttttgttccctataaatatacaaacttttcgttttag 27581877  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 311
Target Start/End: Complemental strand, 43568973 - 43568935
Alignment:
Q  273 ttaaatatgtttttgttccttatcaatattctaactttt 311  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  43568973 ttaaatatgtttttgttccttataaatattcaaactttt 43568935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 318
Target Start/End: Complemental strand, 32144633 - 32144589
Alignment:
Q  274 taaatatgtttttgttccttatcaatattctaacttttcatttta 318  Q
    |||||||||||||| | ||||| |||||| |||||||||||||||    
T  32144633 taaatatgtttttgatgcttataaatattttaacttttcatttta 32144589  T

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