View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13321_low_4 (Length: 351)
Name: NF13321_low_4
Description: NF13321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13321_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 28 - 341
Target Start/End: Original strand, 40733996 - 40734309
Alignment:
| Q |
28 |
ggttcaactctcacccaagataatttcataggaacggccttggaaagcaccaagaatgccaactagctccccttctcaaaccaaattaatcacgtctttg |
127 |
Q |
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| T |
40733996 |
ggttcaactctcacctaggataatttcataggaacagccctggaaagcaccaagaatgccaactagctccccttctcaaaccaaattaatcacgtctttg |
40734095 |
T |
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| Q |
128 |
ataccacttattgcgaagtcttgataatactggaatcattacaaacaattaatgatgcgtnnnnnnnctccgataccacatcttcatacaaaatattatg |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
40734096 |
ataccacttattgcgaagtcttgataatactggaatcattacaaacaattaatgatgcgtaaaaaaactctgataccacatcttcatacaaaatattatg |
40734195 |
T |
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| Q |
228 |
acatagattatatgtgtttgttttttatatatcattcatttagcttgatcctttggactaacgtaagactaatcggtcacacttgaattccaacaccacc |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40734196 |
acatagattatatgtgtttgttttttatatatcattcatttagcttgatcctttgaactcacgtaagactaatcggtcacacttgaattccaacaccacc |
40734295 |
T |
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| Q |
328 |
attcctcacctttg |
341 |
Q |
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|| ||||||||||| |
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| T |
40734296 |
atccctcacctttg |
40734309 |
T |
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