View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13321_low_5 (Length: 347)

Name: NF13321_low_5
Description: NF13321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13321_low_5
NF13321_low_5
[»] chr2 (6 HSPs)
chr2 (117-331)||(18908505-18908719)
chr2 (126-331)||(18913262-18913467)
chr2 (117-331)||(18920467-18920674)
chr2 (29-117)||(18912334-18912422)
chr2 (151-191)||(20712293-20712333)
chr2 (151-191)||(21021047-21021087)
[»] chr7 (12 HSPs)
chr7 (118-276)||(19358119-19358280)
chr7 (129-273)||(19779814-19779961)
chr7 (115-273)||(19887408-19887569)
chr7 (129-191)||(19350810-19350872)
chr7 (143-192)||(22524932-22524981)
chr7 (144-194)||(21218467-21218517)
chr7 (150-202)||(19645454-19645506)
chr7 (151-192)||(22534885-22534926)
chr7 (234-271)||(29453958-29453995)
chr7 (148-192)||(7310970-7311014)
chr7 (137-189)||(15571632-15571684)
chr7 (234-266)||(29895645-29895677)
[»] chr3 (2 HSPs)
chr3 (115-192)||(12734505-12734582)
chr3 (129-273)||(32578573-32578720)
[»] chr6 (4 HSPs)
chr6 (115-273)||(14749585-14749746)
chr6 (129-189)||(6921076-6921136)
chr6 (148-189)||(6942712-6942753)
chr6 (129-189)||(6934959-6935019)
[»] scaffold0464 (2 HSPs)
scaffold0464 (115-192)||(8357-8434)
scaffold0464 (229-273)||(8273-8317)
[»] scaffold0128 (2 HSPs)
scaffold0128 (143-194)||(25879-25930)
scaffold0128 (146-192)||(4400-4446)
[»] chr5 (2 HSPs)
chr5 (146-192)||(42298374-42298420)
chr5 (144-197)||(24330613-24330666)
[»] chr8 (1 HSPs)
chr8 (151-192)||(27618724-27618765)
[»] chr4 (3 HSPs)
chr4 (129-192)||(53775098-53775161)
chr4 (146-192)||(2911332-2911378)
chr4 (243-272)||(3565936-3565965)
[»] chr1 (1 HSPs)
chr1 (144-197)||(21855097-21855150)
[»] scaffold0097 (1 HSPs)
scaffold0097 (151-191)||(16132-16172)


Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 117 - 331
Target Start/End: Original strand, 18908505 - 18908719
Alignment:
Q  117 aaaatcaattagaacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcattggtattaaaccatgatatttc 216  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  18908505 aaaatcaattagaacaattaaatcatcgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcattggtattaaaccatgatatttg 18908604  T
Q  217 tttgctagttgcaatttgctcaactttattatctctccaattatagagaattgcatgttggcggtcatagccataaatgaggcctcgttgattgcttgcc 316  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||| |||||||| |||||||||||||||||||||||||    
T  18908605 tttgctagttgcaatttgttcaactttattatctctccaattataaagaattgcatgtcggcggtgatagccatgaatgaggcctcgttgattgcttgcc 18908704  T
Q  317 attaccagtgtgttg 331  Q
    |||||||||||||||    
T  18908705 attaccagtgtgttg 18908719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 126 - 331
Target Start/End: Original strand, 18913262 - 18913467
Alignment:
Q  126 tagaacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcattggtattaaaccatgatatttctttgctagt 225  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||  ||||||| ||||||  |||| |  ||| ||||    
T  18913262 tagaacaattaaatcattgaagagaaacttactttcaagaggttgataccaagctttcaacataattcttggtatgaaaccacaatatgttattgttagt 18913361  T
Q  226 tgcaatttgctcaactttattatctctccaattatagagaattgcatgttggcggtcatagccataaatgaggcctcgttgattgcttgccattaccagt 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  18913362 tgcaatttgctcaactttattatctctccaattatagagaattgcatgttggcggtgatagccatgaatgaggcctcgttgattgcttgccattaccagt 18913461  T
Q  326 gtgttg 331  Q
    ||||||    
T  18913462 gtgttg 18913467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 117 - 331
Target Start/End: Original strand, 18920467 - 18920674
Alignment:
Q  117 aaaatcaattagaacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcattggtattaaaccatgatatttc 216  Q
    ||||| |||||||| || |||||||||||||| |||||||| |       | ||||| |||||||||||||||||  || |||| ||||||   |||||     
T  18920467 aaaattaattagaataactaaatcattgaagataaacttacat-------ggtgaaatcaagctttcaacataattctttgtatgaaaccacattatttg 18920559  T
Q  217 tttgctagttgcaatttgctcaactttattatctctccaattatagagaattgcatgttggcggtcatagccataaatgaggcctcgttgattgcttgcc 316  Q
     |||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  18920560 attgtaagttgcaatttgctcaactttattttctctccaattatagagaattgcatgttggcggttatagccatgaatgaggcctcgttgattgcttgcc 18920659  T
Q  317 attaccagtgtgttg 331  Q
    |||| ||||||||||    
T  18920660 attatcagtgtgttg 18920674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 18912334 - 18912422
Alignment:
Q  29 ttcctttgtgaaaagagtaatagagaaattatcttcaaccttgatgaatataagccagtaccacaagtggcacgacgattatgatatta 117  Q
    |||||| ||||||| | |||||||||||||| ||||||||| ||||  || |||||| | ||||| ||| ||| ||| |||||||||||    
T  18912334 ttccttcgtgaaaataataatagagaaattagcttcaacctcgatgcctaaaagccaatgccacaggtgacaccacggttatgatatta 18912422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 20712293 - 20712333
Alignment:
Q  151 aacttactttcaagaggttgaaaccaagctttcaacataat 191  Q
    ||||||||||||| | ||||||||||||||||| |||||||    
T  20712293 aacttactttcaacaagttgaaaccaagctttcgacataat 20712333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 21021047 - 21021087
Alignment:
Q  151 aacttactttcaagaggttgaaaccaagctttcaacataat 191  Q
    ||||||||||||| | ||||||||||| |||||||||||||    
T  21021047 aacttactttcaacaagttgaaaccaaactttcaacataat 21021087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 118 - 276
Target Start/End: Complemental strand, 19358280 - 19358119
Alignment:
Q  118 aaatcaattagaacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcattggtattaaaccatgatatttct 217  Q
    |||| |||| ||||||||||||||| ||||| |||||||||||||||||| |||||| ||||||||||||||||| ||||||| ||||||  ||||||      
T  19358280 aaataaatttgaacaattaaatcatagaagagaaacttactttcaagaggatgaaactaagctttcaacataatctttggtataaaaccaccatatttta 19358181  T
Q  218 ttgct---agttgcaatttgctcaactttattatctctccaattatagagaattgcatgttg 276  Q
    ||| |   || || | | ||||  ||| | ||||||||||||||||||||||||||||||||    
T  19358180 ttgttgacagatgtagtatgctttactcttttatctctccaattatagagaattgcatgttg 19358119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 129 - 273
Target Start/End: Complemental strand, 19779961 - 19779814
Alignment:
Q  129 aacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcattggtattaaaccatgatatttctttg---ctagt 225  Q
    |||| ||||||||||||||| ||||||||| |||| |||||||||| ||||||||||||||||| ||||||| ||||||  ||||||| |||     ||     
T  19779961 aacagttaaatcattgaagagaaacttactctcaaaaggttgaaactaagctttcaacataatccttggtatgaaaccacaatatttcattgtcaacaga 19779862  T
Q  226 tgcaatttgctcaactttattatctctccaattatagagaattgcatg 273  Q
    || ||||||||| ||  | |||||||||||||||||||||||||||||    
T  19779861 tgtaatttgctctaccgttttatctctccaattatagagaattgcatg 19779814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 115 - 273
Target Start/End: Original strand, 19887408 - 19887569
Alignment:
Q  115 ttaaaatcaattagaacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcattggtattaaaccatgatatt 214  Q
    ||||||| ||||  |||||||||||||||||| | ||||||||| |||| || ||||||| ||||||||||||||||| ||||||| ||||||  |||||    
T  19887408 ttaaaattaattcaaacaattaaatcattgaatagaaacttactctcaaaagattgaaactaagctttcaacataatccttggtatgaaaccacaatatt 19887507  T
Q  215 tctttg---ctagttgcaatttgctcaactttattatctctccaattatagagaattgcatg 273  Q
    || |||     || || ||||||||| ||  | ||||||||||| ||||||| |||||||||    
T  19887508 tcattgtcaacagatgtaatttgctctaccgttttatctctccagttatagataattgcatg 19887569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 19350810 - 19350872
Alignment:
Q  129 aacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataat 191  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||    
T  19350810 aacaattaaatcattaaagagaaacttactttcaagaggttgaaactaagctttcaacataat 19350872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 22524932 - 22524981
Alignment:
Q  143 tgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatc 192  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  22524932 tgaagaagaacttactttcaagaagttgaaaccaagctttcaacataatc 22524981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 21218467 - 21218517
Alignment:
Q  144 gaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcat 194  Q
    |||||| ||||||||||||||| ||||||||||||||||| ||||||||||    
T  21218467 gaagaagaacttactttcaagaagttgaaaccaagctttcgacataatcat 21218517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 19645454 - 19645506
Alignment:
Q  150 aaacttactttcaagaggttgaaaccaagctttcaacataatcattggtatta 202  Q
    |||||||||||||| | ||||||||||| |||||||||||||| |||| ||||    
T  19645454 aaacttactttcaacaagttgaaaccaaactttcaacataatccttggaatta 19645506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 22534926 - 22534885
Alignment:
Q  151 aacttactttcaagaggttgaaaccaagctttcaacataatc 192  Q
    ||||||||||||||| | ||||||||||||||| ||||||||    
T  22534926 aacttactttcaagaaggtgaaaccaagctttcgacataatc 22534885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 29453958 - 29453995
Alignment:
Q  234 gctcaactttattatctctccaattatagagaattgca 271  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  29453958 gctctactttattatctctccagttatagagaattgca 29453995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 7310970 - 7311014
Alignment:
Q  148 aaaaacttactttcaagaggttgaaaccaagctttcaacataatc 192  Q
    |||||||||||||||| ||||||||||||  ||||| ||||||||    
T  7310970 aaaaacttactttcaataggttgaaaccagactttcgacataatc 7311014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 15571632 - 15571684
Alignment:
Q  137 aatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacata 189  Q
    |||||| ||| ||||||||||||||| || || || |||||||||||||||||    
T  15571632 aatcatcgaacaaaaacttactttcaggaagtcgataccaagctttcaacata 15571684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 266
Target Start/End: Complemental strand, 29895677 - 29895645
Alignment:
Q  234 gctcaactttattatctctccaattatagagaa 266  Q
    |||| ||||||||||||||||||||||||||||    
T  29895677 gctctactttattatctctccaattatagagaa 29895645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 12734505 - 12734582
Alignment:
Q  115 ttaaaatcaattagaacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatc 192  Q
    ||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||    
T  12734505 ttaaaattaattagaactattaaatcattgaagagaaacttactttcaagaggttgaaactaagctttcaaaataatc 12734582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 273
Target Start/End: Original strand, 32578573 - 32578720
Alignment:
Q  129 aacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcattggtattaaaccatgatatttctttg---ctagt 225  Q
    |||||||||||||||||||| ||||||||| |||| |||||||||  ||||||||||||||| | ||||||| ||||||  ||||||| | |     ||     
T  32578573 aacaattaaatcattgaagagaaacttactctcaaaaggttgaaaataagctttcaacataagccttggtatgaaaccacaatatttcatcgtcaacaga 32578672  T
Q  226 tgcaatttgctcaactttattatctctccaattatagagaattgcatg 273  Q
    || ||||||||||||  | |||| |||||||| |||||||||||||||    
T  32578673 tgtaatttgctcaacccttttatttctccaatcatagagaattgcatg 32578720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 115 - 273
Target Start/End: Complemental strand, 14749746 - 14749585
Alignment:
Q  115 ttaaaatcaattagaacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcattggtattaaaccatgatatt 214  Q
    ||||||| ||||  || ||||||||||||||||| ||||||||||||||||| ||||||  |||||||||||| |||| ||||||| ||||||  |||||    
T  14749746 ttaaaattaattcaaaaaattaaatcattgaagagaaacttactttcaagagcttgaaattaagctttcaacaaaatccttggtataaaaccacaatatt 14749647  T
Q  215 tctttg---ctagttgcaatttgctcaactttattatctctccaattatagagaattgcatg 273  Q
    || |||   | || || |||||| |||||  | |||||| |||||||||||| |||||||||    
T  14749646 tcattgtcaccagatgtaatttgttcaacccttttatctatccaattatagataattgcatg 14749585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 6921076 - 6921136
Alignment:
Q  129 aacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacata 189  Q
    ||||| |||||||| ||| |||||||||||||||||| || || |||||||||||||||||    
T  6921076 aacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacata 6921136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 6942712 - 6942753
Alignment:
Q  148 aaaaacttactttcaagaggttgaaaccaagctttcaacata 189  Q
    |||||||||||||||||| ||||| |||||||||||||||||    
T  6942712 aaaaacttactttcaagaagttgataccaagctttcaacata 6942753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 6934959 - 6935019
Alignment:
Q  129 aacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacata 189  Q
    ||||| |||||||||||||| ||| |||| ||||||| || || ||||| |||||||||||    
T  6934959 aacaagtaaatcattgaagagaaaattaccttcaagaagtcgataccaaactttcaacata 6935019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 115 - 192
Target Start/End: Complemental strand, 8434 - 8357
Alignment:
Q  115 ttaaaatcaattagaacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatc 192  Q
    ||||||| ||||||||| ||||||| ||| |||| ||||||||||||||||||||||||| |||||||||| ||||||    
T  8434 ttaaaattaattagaactattaaattattaaagagaaacttactttcaagaggttgaaactaagctttcaaaataatc 8357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 8317 - 8273
Alignment:
Q  229 aatttgctcaactttattatctctccaattatagagaattgcatg 273  Q
    ||||||||||||  | ||||||||||||||||||| |||||||||    
T  8317 aatttgctcaacccttttatctctccaattatagataattgcatg 8273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 194
Target Start/End: Complemental strand, 25930 - 25879
Alignment:
Q  143 tgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcat 194  Q
    ||||||||||||||||||||| || || ||||||||||||| ||||||||||    
T  25930 tgaagaaaaacttactttcaacagattaaaaccaagctttcgacataatcat 25879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 4446 - 4400
Alignment:
Q  146 agaaaaacttactttcaagaggttgaaaccaagctttcaacataatc 192  Q
    |||| ||||||||||||||| ||||||||||||||||| ||||||||    
T  4446 agaagaacttactttcaagaagttgaaaccaagctttcgacataatc 4400  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 42298420 - 42298374
Alignment:
Q  146 agaaaaacttactttcaagaggttgaaaccaagctttcaacataatc 192  Q
    |||| ||||||||||||||| ||||||||||||||||| ||||||||    
T  42298420 agaagaacttactttcaagaagttgaaaccaagctttcgacataatc 42298374  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 24330613 - 24330666
Alignment:
Q  144 gaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcattgg 197  Q
    ||||| |||||||||||||| |  ||| ||| ||||||||||||||||||||||    
T  24330613 gaagagaaacttactttcaaaaacttggaactaagctttcaacataatcattgg 24330666  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 27618765 - 27618724
Alignment:
Q  151 aacttactttcaagaggttgaaaccaagctttcaacataatc 192  Q
    |||||||||||||||  |||||||||||||||||||||||||    
T  27618765 aacttactttcaagaaattgaaaccaagctttcaacataatc 27618724  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 53775161 - 53775098
Alignment:
Q  129 aacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatc 192  Q
    ||||| |||||| | |||||  ||||||||||||| | ||||| ||||||||||||||||||||    
T  53775161 aacaagtaaatcttggaagaggaacttactttcaacacgttgataccaagctttcaacataatc 53775098  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 2911378 - 2911332
Alignment:
Q  146 agaaaaacttactttcaagaggttgaaaccaagctttcaacataatc 192  Q
    |||| ||||||||||||||| ||||| ||||||||||| ||||||||    
T  2911378 agaagaacttactttcaagaagttgataccaagctttctacataatc 2911332  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 272
Target Start/End: Complemental strand, 3565965 - 3565936
Alignment:
Q  243 tattatctctccaattatagagaattgcat 272  Q
    ||||||||||||||||||||||||||||||    
T  3565965 tattatctctccaattatagagaattgcat 3565936  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 21855097 - 21855150
Alignment:
Q  144 gaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcattgg 197  Q
    ||||| |||||||||||||| |  ||| ||| ||||||||||||||||||||||    
T  21855097 gaagagaaacttactttcaaaaacttggaactaagctttcaacataatcattgg 21855150  T

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Target: scaffold0097 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 16132 - 16172
Alignment:
Q  151 aacttactttcaagaggttgaaaccaagctttcaacataat 191  Q
    ||||||||||||| | ||||||||||||||||| |||||||    
T  16132 aacttactttcaacaagttgaaaccaagctttcgacataat 16172  T

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