View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13322_high_2 (Length: 651)
Name: NF13322_high_2
Description: NF13322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13322_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 476; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 1 - 638
Target Start/End: Original strand, 31768502 - 31769138
Alignment:
| Q |
1 |
cggacactcgttcttttgtacacctacaacacttgattaatcatgtgtaaaaatatgattaatttagttcatgttgaaaattgtatttgattataaagtt |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31768502 |
cggacactcgttcttttgtatacctacaacatttgattaatcatgtgtaaaaatatgattaatttagttcatgttggaaattgtatttgattataaagtt |
31768601 |
T |
|
| Q |
101 |
gaattagccacaattttgaccgtgaattgaaattgtcacctactcaattgagttaaccacaaatttccacgtgataaaccatgtgtcgcgctcgtgtatg |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31768602 |
gaattagccacaattttaaccgtgaattgaaattgtcatctactcaattgagttaaccaaaaatttccacgtgataaaccatgtgtcgcgctggtgtatg |
31768701 |
T |
|
| Q |
201 |
aaaaaggagtgtccatgtatcatttttgttcttaaaatttgtccaaaacattactaacaataattgatgtccctacttttaattagaaattcaaggtcct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31768702 |
aaaaaggagtgtccatgtatcatttttgttctttaaatttgtccaaaacattactaacaataattgatgcccctacttttaattagaaattcaaggtcct |
31768801 |
T |
|
| Q |
301 |
caacatataggcttgaaaaaccatgactatatcggtgttgatt-nnnnnnnnngaactaatataagttgaattttaaaacaatgatattcattttcgtta |
399 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
31768802 |
caacatataggcttgaaaaacgatgactatatcggtgttgattcaacaaaaaagaactaatataagttgaa-tttaaaacaatgatattcattttcctta |
31768900 |
T |
|
| Q |
400 |
---nnnnnnnngggtcaaatcaacattggttttcgccgtctcacttgtgataacaagtaagtaatatcacgagcttctccttacaaatagcaacaccgat |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||| ||||||||| |
|
|
| T |
31768901 |
ttttttttttttggtcaaatcaacattggttttcgccgtctcacttgtgataac----aagtaatatcacgagtttctacttacaaatagaaacaccgat |
31768996 |
T |
|
| Q |
497 |
aatataagaatttcaaactattttcaaaaataaggttgtcttagatcaaatgaaacacttgcataagagtcacttaattttattttattttcagaagaag |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31768997 |
aatataagaatttcaaactattttcaaaaataagtttgtcttagatcaaatgaaacacttgcataagagtcacttaattttattttattttcagaagaag |
31769096 |
T |
|
| Q |
597 |
ctttaaaagatattattaatatgtttagaacgctttaaaaga |
638 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31769097 |
ctttaaaagatattattaatatgtttagaaagctttaaaaga |
31769138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 579 - 626
Target Start/End: Original strand, 31769140 - 31769187
Alignment:
| Q |
579 |
ttttattttcagaagaagctttaaaagatattattaatatgtttagaa |
626 |
Q |
| |
|
|||| |||| |||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
31769140 |
ttttttttttagaagaagctttgaaagatattattaataagtttagaa |
31769187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 48371640 - 48371589
Alignment:
| Q |
18 |
gtacacctacaacacttgattaatcatgtgtaaaaatatgattaatttagtt |
69 |
Q |
| |
|
||||||||||||||| | |||||||||||| ||||||| |||||||| |||| |
|
|
| T |
48371640 |
gtacacctacaacaccttattaatcatgtgcaaaaatacgattaattcagtt |
48371589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University