View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13322_high_4 (Length: 418)

Name: NF13322_high_4
Description: NF13322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13322_high_4
NF13322_high_4
[»] chr3 (1 HSPs)
chr3 (16-305)||(53830073-53830367)


Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 53830073 - 53830367
Alignment:
Q  16 atcaagcccaaacataatcctcctccttcatctggggatcgtgatatagacatcactggccagtcctatatccagtaataacaacatatatgtaaa-tgc 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |    
T  53830073 atcaagcccaaacataatcctcctccttcatctggggatcgtgatatagacatcactggccagtcctatatccagtaataacaacatatatgtaaaatac 53830172  T
Q  115 ttagcctaattagtataattaggacgttattttcttatcttaaaatatatatta----ggacgttcatcttttaatttaaggggtcttttttgtttctgt 210  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||    
T  53830173 ttagcctaattagtataattaggacgttattttctgatcttaaaatatatattaattaggacgttcatcttttaatttaaggggtcttttttgtttctgt 53830272  T
Q  211 tgtcattggtggctgtattttcttttaataagttttcttccatcatttccctcatgtataaactttggtgatccacttcgtaatgttaatgagcg 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  53830273 tgtcattggtggctgtattttcttttaataagttttcttccatcatttccctcatgtataaactgtggtgatccacttcgtaatgttaatgagcg 53830367  T

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