View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13322_high_6 (Length: 303)
Name: NF13322_high_6
Description: NF13322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13322_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 288
Target Start/End: Original strand, 31721465 - 31721743
Alignment:
| Q |
8 |
tgaaatgagctgaagagcctagcaatatctataagaatgtaatgtagaaaagtaaaaataaacatatattattttagaactttaggctctccaatcacca |
107 |
Q |
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| T |
31721465 |
tgaaatgaactgaagagcctagcaatatctataataatgtaatgtagaaaagtaaaaataaacatatattattttagaactttaggctctccaatcacca |
31721564 |
T |
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| Q |
108 |
atacttataaataggcatgatgtgttatccacannnnnnnnnnnnnngtagagttcactcgaagccactaccaactagtgtatgatattgtgttgtgtct |
207 |
Q |
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| T |
31721565 |
atacttataaataggcatgatgtattatccacatgtgtgtgtgtg--gtagagttcactcgaagccactaccaactagtgtatgatattgtgttgtgtct |
31721662 |
T |
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| Q |
208 |
ggttctattttctgtttggataaacaatttaatttacttgtccctttcttaattccaacaggtatgaagttgggatgggac |
288 |
Q |
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| T |
31721663 |
ggttctattttctgtttggataaacaatttaatttacttgtccctttcttaattccaacaggtatgaagttgggatgggac |
31721743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 12 - 288
Target Start/End: Original strand, 31715606 - 31715869
Alignment:
| Q |
12 |
atgagctgaagagcctagcaatatctataagaatgtaatgtagaaaagtaaaaataaacatatattattttagaactttaggctctccaatcaccaatac |
111 |
Q |
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| T |
31715606 |
atgaactgatgagcctaaaaatatctataataaagtattgcagaaaagtataaagagacatatattattttagaacttttgg-------agcaccaatac |
31715698 |
T |
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| Q |
112 |
ttataaataggcatgatgtgttatccacannnnnnnnnnnnnngtagagttcactcgaagccactaccaactagtgtatgatattgtgttgtgtctggtt |
211 |
Q |
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| T |
31715699 |
ttgtaaataggcatgatgtgttattcacaagtgtgtg------gtagagttcactctaagccactaccaactagtgtatgatatcgtgctgtgtctggtt |
31715792 |
T |
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| Q |
212 |
ctattttctgtttggataaacaatttaatttacttgtccctttcttaattccaacaggtatgaagttgggatgggac |
288 |
Q |
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| T |
31715793 |
ctattttctgtttggataaacaatttaatttacttgtccctttcttaattccaacaggtatgaagttgggatgggac |
31715869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 173 - 288
Target Start/End: Original strand, 31700448 - 31700561
Alignment:
| Q |
173 |
cactaccaactagtgtatgatattgtgttgtgtctggttctattttctgtttggataaacaatttaatttacttgtccctttcttaattccaacaggtat |
272 |
Q |
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| T |
31700448 |
cactaacaactagtttatgatattatg--gtgtctgtttctattttctgtttggataaacaatttaatttacttgtccccttcttaattccaacaggtat |
31700545 |
T |
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| Q |
273 |
gaagttgggatgggac |
288 |
Q |
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| T |
31700546 |
gaaattgggatgggac |
31700561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 31723050 - 31723114
Alignment:
| Q |
224 |
tggataaacaatttaatttacttgtccctttcttaattccaacaggtatgaagttgggatgggac |
288 |
Q |
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| T |
31723050 |
tggataaacaatttaatttacttgtccctctcttaattccaacaggtatgaagttgggatgggac |
31723114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 31700394 - 31700431
Alignment:
| Q |
103 |
caccaatacttataaataggcatgatgtgttatccaca |
140 |
Q |
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| T |
31700394 |
caccaatacttataaataggcatgatgtgttattcaca |
31700431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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