View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13322_high_8 (Length: 237)
Name: NF13322_high_8
Description: NF13322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13322_high_8 |
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| [»] chr6 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 17987967 - 17987747
Alignment:
| Q |
17 |
ataaagcatggtcaacactggtgctaaccgtggtcaaaaacttgatagccgtgacagcaagttgatcacgactactcgattgtgatacatttctcaacaa |
116 |
Q |
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| T |
17987967 |
ataaagcatggtgaacacttgtgctaactgtggttaaaaacttgatagccgtgacagcaagttgatcacgaccactcgattgtgacacgttccttaacaa |
17987868 |
T |
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| Q |
117 |
actccacacatcatgtgcaaaaccactcaagaatcccttaaactcctcctcatactttaccatatatagattaatattctcacaaacagcaaccctaagt |
216 |
Q |
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| T |
17987867 |
attccacacatcttgtgcaaaaccactcaagtgttccttaaactcctcctcatactttaccatatatagattaatattctcacaaacagcaaccctaagt |
17987768 |
T |
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| Q |
217 |
tcgtctacaagagcaagacca |
237 |
Q |
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| T |
17987767 |
tcgtctacaagagcaagacca |
17987747 |
T |
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Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 237
Target Start/End: Original strand, 9752553 - 9752760
Alignment:
| Q |
30 |
aacactggtgctaaccgtggtcaaaaacttgatagccgtgacagcaagttgatcacgactactcgattgtgatacatttctcaacaaactccacacatca |
129 |
Q |
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| T |
9752553 |
aacactcgtactaaccgtcgtcaaaaacttaatcgccgtaaccgcaagctggtcacgactagtcgactgcgacacattccctaacaaagtccacacagca |
9752652 |
T |
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| Q |
130 |
tgtgcaaaaccactcaagaatcccttaaactcctcctcatactttaccatatatagattaatattctcacaaacagcaaccctaagttcgtctacaagag |
229 |
Q |
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| T |
9752653 |
agtgcaaaatcattcaaaaaaaccttaaactcctcctcattcttctccatgtacagattaatattctcacaaaccgcagcccgaagctcatccacaagag |
9752752 |
T |
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| Q |
230 |
caagacca |
237 |
Q |
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| T |
9752753 |
caagacca |
9752760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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