View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13322_low_1 (Length: 716)

Name: NF13322_low_1
Description: NF13322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13322_low_1
NF13322_low_1
[»] chr3 (1 HSPs)
chr3 (1-704)||(50686395-50687097)


Alignment Details
Target: chr3 (Bit Score: 664; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 664; E-Value: 0
Query Start/End: Original strand, 1 - 704
Target Start/End: Original strand, 50686395 - 50687097
Alignment:
Q  1 cgaactcaggaagaccatcggaaggacaatcttcggttctaacactgcttttgacaaaatctgcttgtataatttgagcatcattggcgtagttactgag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50686395 cgaactcaggaagaccatcggaaggacaatcttcggttctaacactgcttttgacaaaatctgcttgtataatttgagcatcattggcgtagttactgag 50686494  T
Q  101 taatatatttgaaccgtttaagattcttgcattttcgtgagtgacatgagtgtttggaggaatgaagagtttttcgagtgataagggttcggttttaggg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50686495 taatatatttgaaccgtttaagattcttgcattttcgtgagtgacatgagtgtttggaggaatgaagagtttttcgagtgataagggttcggttttaggg 50686594  T
Q  201 gttattatgggttctagatttggttctgaagttgtgagagatgattttggtggtttgtttaagagtgtggttaaggtgtttgttgaatagactctgcgag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50686595 gttattatgggttctagatttggttctgaagttgtgagagatgattttggtggtttgtttaagagtgtggttaaggtgtttgttgaatagactctgcgag 50686694  T
Q  301 aaaatgaagaagatgagactgtgaaaagggaaaaggataaccttgggagatgaaggacaaccatatcacactctattgagaagacacgcggtcttgtgga 400  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  50686695 aaaatgaagaagatgagactgtgaaaagggaaaaggataacctcgggagatgaaggacaaccatatcacactctattgagaagacacgcggtgttgtgga 50686794  T
Q  401 aatatctcagcaatgagtgttttgctcgcgatacggtcagtttctcaagtgggagtttttgcttgggtaacctcacaaatggaaggatttgcgtacattt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50686795 aatatctcagcaatgagtgttttgctcgcgatacggtcagtttctcaagtgggagtttttgcttgggtaacctcacaaatggaaggatttgcgtacattt 50686894  T
Q  501 ttcaaagaataaaccatcagacaatttagttgatcaactcacttaagtggtttttaacaacagatttggttcccctcagcaaagaagaattgcctagtgt 600  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  50686895 ttcaaagaataaaccatcaaacaatttagttgatcaactcacttaagtggtttttaacaacagatttggttcccctcagcaaaaaagaattgcctagtgt 50686994  T
Q  601 ttgttgagttgttcgtgaattgatcttgatgcggagttttgattttcgattttgttgtgatgttgattcaatatatattgattcgtcctcttctatgtta 700  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| || |||||||||    
T  50686995 gtgttgagttgttcgtgaattgatcttgatgcggagttttgattttcgattttgctgtgatgttgattcaatatatattgatt-gtcttcatctatgtta 50687093  T
Q  701 tatt 704  Q
    ||||    
T  50687094 tatt 50687097  T

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