View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13322_low_3 (Length: 523)

Name: NF13322_low_3
Description: NF13322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13322_low_3
NF13322_low_3
[»] chr6 (64 HSPs)
chr6 (341-505)||(26805558-26805722)
chr6 (341-505)||(27674518-27674682)
chr6 (411-505)||(27681993-27682087)
chr6 (423-505)||(27715542-27715624)
chr6 (356-505)||(27590104-27590253)
chr6 (404-505)||(27608133-27608234)
chr6 (411-505)||(27695600-27695694)
chr6 (419-502)||(26952644-26952727)
chr6 (422-502)||(26887831-26887908)
chr6 (431-502)||(26826920-26826991)
chr6 (411-502)||(26851567-26851658)
chr6 (433-502)||(28789405-28789474)
chr6 (422-502)||(25491190-25491270)
chr6 (68-136)||(27695299-27695367)
chr6 (432-499)||(25486406-25486473)
chr6 (432-499)||(25513911-25513978)
chr6 (432-499)||(26058955-26059022)
chr6 (432-499)||(26078925-26078992)
chr6 (411-502)||(26659014-26659105)
chr6 (411-502)||(26764985-26765076)
chr6 (194-241)||(27674374-27674421)
chr6 (191-248)||(27682238-27682295)
chr6 (191-248)||(27715331-27715388)
chr6 (415-502)||(26061605-26061690)
chr6 (415-502)||(26081575-26081660)
chr6 (78-134)||(27682328-27682384)
chr6 (432-499)||(25548016-25548083)
chr6 (432-499)||(25582743-25582810)
chr6 (191-238)||(27607950-27607997)
chr6 (191-241)||(27589947-27589997)
chr6 (432-502)||(28795429-28795499)
chr6 (422-502)||(26638443-26638526)
chr6 (422-502)||(26744409-26744492)
chr6 (67-136)||(27589841-27589910)
chr6 (67-136)||(27607817-27607886)
chr6 (67-136)||(27674265-27674334)
chr6 (196-257)||(27695403-27695464)
chr6 (79-136)||(27715243-27715300)
chr6 (191-231)||(25486668-25486708)
chr6 (414-502)||(27074282-27074370)
chr6 (192-231)||(26059223-26059262)
chr6 (192-231)||(26079193-26079232)
chr6 (419-502)||(26962137-26962220)
chr6 (191-241)||(27657544-27657594)
chr6 (422-498)||(31287627-31287706)
chr6 (422-502)||(25077052-25077132)
chr6 (191-231)||(25514161-25514201)
chr6 (191-231)||(26146295-26146335)
chr6 (427-502)||(26626168-26626246)
chr6 (427-502)||(26732145-26732223)
chr6 (196-231)||(25583014-25583049)
chr6 (432-499)||(26146036-26146103)
chr6 (433-488)||(27528708-27528763)
chr6 (447-502)||(28246419-28246474)
chr6 (191-241)||(26805825-26805875)
chr6 (422-502)||(27662413-27662496)
chr6 (449-502)||(28142689-28142742)
chr6 (423-502)||(26649511-26649593)
chr6 (423-502)||(26755479-26755561)
chr6 (67-106)||(27703602-27703641)
chr6 (449-502)||(2170645-2170698)
chr6 (434-502)||(27657793-27657862)
chr6 (67-136)||(31287995-31288064)
chr6 (431-487)||(26876614-26876670)
[»] chr8 (3 HSPs)
chr8 (341-505)||(29270796-29270960)
chr8 (68-165)||(29270538-29270635)
chr8 (191-238)||(29270670-29270717)
[»] scaffold0349 (3 HSPs)
scaffold0349 (423-505)||(16321-16403)
scaffold0349 (79-136)||(16644-16701)
scaffold0349 (191-248)||(16557-16613)
[»] chr2 (1 HSPs)
chr2 (427-502)||(17990182-17990257)
[»] chr1 (6 HSPs)
chr1 (411-505)||(265355-265449)
chr1 (192-257)||(265145-265210)
chr1 (419-502)||(26139027-26139110)
chr1 (430-487)||(28129711-28129768)
chr1 (430-465)||(28124680-28124715)
chr1 (192-240)||(26139328-26139376)
[»] scaffold0419 (1 HSPs)
scaffold0419 (433-502)||(10555-10624)
[»] scaffold0277 (3 HSPs)
scaffold0277 (433-502)||(1759-1828)
scaffold0277 (433-502)||(10725-10794)
scaffold0277 (201-241)||(1524-1564)
[»] chr4 (11 HSPs)
chr4 (411-502)||(18652549-18652640)
chr4 (411-502)||(18676631-18676722)
chr4 (411-502)||(18721145-18721236)
chr4 (411-502)||(18696480-18696571)
chr4 (411-502)||(18728570-18728661)
chr4 (411-502)||(18686674-18686765)
chr4 (194-241)||(18686451-18686498)
chr4 (194-241)||(18696257-18696304)
chr4 (192-241)||(18676409-18676458)
chr4 (194-230)||(18652350-18652386)
chr4 (411-467)||(18700973-18701029)
[»] scaffold0038 (1 HSPs)
scaffold0038 (447-502)||(46581-46636)
[»] scaffold0286 (1 HSPs)
scaffold0286 (449-502)||(12563-12616)


Alignment Details
Target: chr6 (Bit Score: 121; Significance: 9e-62; HSPs: 64)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 341 - 505
Target Start/End: Complemental strand, 26805722 - 26805558
Alignment:
Q  341 atctatctcaattttatatccattcacaaaataattgactactgagtcagccaactaattttcgccttctggaagaataaaaatacaagttatagaaggg 440  Q
    ||||| |||||||| ||||||||||||||||||||||||| |||||||||| | |  ||||| |||||| ||||||||||||||||| ||||||||||||    
T  26805722 atctaactcaatttcatatccattcacaaaataattgactcctgagtcagctaccccatttttgccttccggaagaataaaaatacatgttatagaaggg 26805623  T
Q  441 atttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtat 505  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26805622 atttctttacgaaaccagaaagaaattgtgggtcccttgctttggtgctcaaaccaatctggtat 26805558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 341 - 505
Target Start/End: Original strand, 27674518 - 27674682
Alignment:
Q  341 atctatctcaattttatatccattcacaaaataattgactactgagtcagccaactaattttcgccttctggaagaataaaaatacaagttatagaaggg 440  Q
    |||||||||||||| |||||||||||||||||||||||||  || ||||||| || |||| | |||||| ||| ||||| ||||| |||| |||||||||    
T  27674518 atctatctcaatttcatatccattcacaaaataattgactcttgtgtcagccgaccaattattgccttccggaggaatacaaatataagtcatagaaggg 27674617  T
Q  441 atttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtat 505  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  27674618 atttctttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcaaaccaatctggtat 27674682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 411 - 505
Target Start/End: Complemental strand, 27682087 - 27681993
Alignment:
Q  411 ggaagaataaaaatacaagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtat 505  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27682087 ggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctgctttggtgctcaaaccaatctggtat 27681993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 423 - 505
Target Start/End: Original strand, 27715542 - 27715624
Alignment:
Q  423 atacaagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtat 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27715542 atacaagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtat 27715624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 356 - 505
Target Start/End: Original strand, 27590104 - 27590253
Alignment:
Q  356 atatccattcacaaaataattgactactgagtcagccaactaattttcgccttctggaagaataaaaatacaagttatagaagggatttctttacgaaac 455  Q
    |||| ||||||||||| ||||||||  || | ||||| || |||| | |||||||| | ||||| ||||| |||| ||||||||||||||||||||||||    
T  27590104 atattcattcacaaaacaattgactcttgtgacagccgaccaattattgccttctgtaggaatacaaatataagtcatagaagggatttctttacgaaac 27590203  T
Q  456 cagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtat 505  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||    
T  27590204 cagaaagaaattgtgtctcccctgctttggtgctcaaaccaatctggtat 27590253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 404 - 505
Target Start/End: Original strand, 27608133 - 27608234
Alignment:
Q  404 gccttctggaagaataaaaatacaagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggt 503  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  27608133 gccttccggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaagtgtgagtcccctgctttggtgctcaaaccaatctggt 27608232  T
Q  504 at 505  Q
    ||    
T  27608233 at 27608234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 411 - 505
Target Start/End: Original strand, 27695600 - 27695694
Alignment:
Q  411 ggaagaataaaaatacaagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtat 505  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||  |||||||||||||||||||||||||||||||||    
T  27695600 ggaagaataaaaatacaagatatagaagggatttctttatgaaaccaaaaagaaattgtgtctcccctgctttggtgctcaaaccaatctggtat 27695694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 419 - 502
Target Start/End: Complemental strand, 26952727 - 26952644
Alignment:
Q  419 aaaaatacaagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 502  Q
    |||||||||||||||||||||||| | | |||||||||||||||||||||||  ||||||| ||||||||||||||||||||||    
T  26952727 aaaaatacaagttatagaagggatctttctacgaaaccagaaagaaattgtgtctcccctggtttggtgctcaaaccaatctgg 26952644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 422 - 502
Target Start/End: Complemental strand, 26887908 - 26887831
Alignment:
Q  422 aatacaagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 502  Q
    |||||||||||||||   ||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  26887908 aatacaagttataga---gatctctttacgaaaccagaaagaaagtgtgtgtcccctgctttggtgctcaaaccaatctgg 26887831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 431 - 502
Target Start/End: Complemental strand, 26826991 - 26826920
Alignment:
Q  431 tatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 502  Q
    |||||||||||||| |||||||||||||||||||||||||  ||| ||||||||||||||||||| ||||||    
T  26826991 tatagaagggatttttttacgaaaccagaaagaaattgtgtctcctctgctttggtgctcaaaccgatctgg 26826920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 411 - 502
Target Start/End: Complemental strand, 26851658 - 26851567
Alignment:
Q  411 ggaagaataaaaatacaagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 502  Q
    |||| ||||| |||||| |||||||||||||| | ||||||||||||||| |||||||||  | |||||||||||||||| |||||||||||    
T  26851658 ggaacaataataatacatgttatagaagggatctttttacgaaaccagaaggaaattgtgttttccctgctttggtgctcgaaccaatctgg 26851567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 433 - 502
Target Start/End: Complemental strand, 28789474 - 28789405
Alignment:
Q  433 tagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 502  Q
    |||||||||| | |||||||||||||||||||||||||  |||||||||||||||||| |||||||||||    
T  28789474 tagaagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctgg 28789405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 422 - 502
Target Start/End: Original strand, 25491190 - 25491270
Alignment:
Q  422 aatacaagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 502  Q
    ||||||| |||| |||||||||||||||| ||||||||||||||||||  |||||||  |||||||||| |||||||||||    
T  25491190 aatacaacttattgaagggatttctttacaaaaccagaaagaaattgtccgtcccctaatttggtgctcgaaccaatctgg 25491270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 27695299 - 27695367
Alignment:
Q  68 ataaggataggtgaataccacattctcctcctccgtgtttttgttctcattccacacgtggattcccat 136  Q
    ||||||||  |||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||    
T  27695299 ataaggatctgtgaataccacattctcctcctccgtgttgcttttctcattccacacgtggattcccat 27695367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 432 - 499
Target Start/End: Complemental strand, 25486473 - 25486406
Alignment:
Q  432 atagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatc 499  Q
    |||||||||| |||||||  |||||||||||||||||||  |||||||||||||||||||||||||||    
T  25486473 atagaagggagttctttatcaaaccagaaagaaattgtgcctcccctgctttggtgctcaaaccaatc 25486406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 432 - 499
Target Start/End: Complemental strand, 25513978 - 25513911
Alignment:
Q  432 atagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatc 499  Q
    |||||||||||||||||| || ||||||||| |||||||  |||||||||||||||||||||||||||    
T  25513978 atagaagggatttctttatgataccagaaagcaattgtgactcccctgctttggtgctcaaaccaatc 25513911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 432 - 499
Target Start/End: Complemental strand, 26059022 - 26058955
Alignment:
Q  432 atagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatc 499  Q
    |||||||||| |||||||  |||||||||||||||||||  |||||||||||||||||||||||||||    
T  26059022 atagaagggagttctttatcaaaccagaaagaaattgtgtctcccctgctttggtgctcaaaccaatc 26058955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 432 - 499
Target Start/End: Complemental strand, 26078992 - 26078925
Alignment:
Q  432 atagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatc 499  Q
    |||||||||| |||||||  |||||||||||||||||||  |||||||||||||||||||||||||||    
T  26078992 atagaagggagttctttatcaaaccagaaagaaattgtgtctcccctgctttggtgctcaaaccaatc 26078925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 411 - 502
Target Start/End: Complemental strand, 26659105 - 26659014
Alignment:
Q  411 ggaagaataaaaatacaagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 502  Q
    ||||||| || ||||||| | ||||||||||| | |||||||||||||||||||| |||  |||||||| |||||||||| |||||||||||    
T  26659105 ggaagaagaagaatacaaataatagaagggatctttttacgaaaccagaaagaaactgtttgtcccctgatttggtgctcgaaccaatctgg 26659014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 411 - 502
Target Start/End: Complemental strand, 26765076 - 26764985
Alignment:
Q  411 ggaagaataaaaatacaagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 502  Q
    ||||||| || ||||||| | ||||||||||| | |||||||||||||||||||| |||  |||||||| |||||||||| |||||||||||    
T  26765076 ggaagaagaagaatacaaataatagaagggatctttttacgaaaccagaaagaaactgtttgtcccctgatttggtgctcgaaccaatctgg 26764985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 27674374 - 27674421
Alignment:
Q  194 cttaaactccacatggatccattcatttttcaaaagtcctttctccat 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27674374 cttaaactccacatggatccattcatttttcaaaagtcctttctccat 27674421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 191 - 248
Target Start/End: Complemental strand, 27682295 - 27682238
Alignment:
Q  191 caacttaaactccacatggatccattcatttttcaaaagtcctttctccatgttatac 248  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||    
T  27682295 caacttaaactccacatagatccattcatttttcaaaagtcctttctctatattatac 27682238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 27715331 - 27715388
Alignment:
Q  191 caacttaaactccacatggatccattcatttttcaaaagtcctttctccatgttatac 248  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||    
T  27715331 caacttaaactccacatggatccattcacttttcaaaagtcctttgtccatattatac 27715388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 415 - 502
Target Start/End: Complemental strand, 26061690 - 26061605
Alignment:
Q  415 gaataaaaatacaagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 502  Q
    |||||| ||||| ||||||||||||||||| |||||||||||||||| |||||||  ||||| || |||||||||  |||||||||||    
T  26061690 gaataataatactagttatagaagggatttatttacgaaaccagaaaaaaattgt--gtcccgtgatttggtgctttaaccaatctgg 26061605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 415 - 502
Target Start/End: Complemental strand, 26081660 - 26081575
Alignment:
Q  415 gaataaaaatacaagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 502  Q
    |||||| ||||| ||||||||||||||||| |||||||||||||||| |||||||  ||||| || |||||||||  |||||||||||    
T  26081660 gaataataatactagttatagaagggatttatttacgaaaccagaaaaaaattgt--gtcccgtgatttggtgctttaaccaatctgg 26081575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 27682384 - 27682328
Alignment:
Q  78 gtgaataccacattctcctcctccgtgtttttgttctcattccacacgtggattccc 134  Q
    |||||||||||||||||||||||||||||  | ||||||||||||||||||||||||    
T  27682384 gtgaataccacattctcctcctccgtgttgcttttctcattccacacgtggattccc 27682328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 432 - 499
Target Start/End: Complemental strand, 25548083 - 25548016
Alignment:
Q  432 atagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatc 499  Q
    |||||||||| |||||||  ||||||||||||||||||   |||||||||||||||||||||||||||    
T  25548083 atagaagggagttctttatcaaaccagaaagaaattgtctctcccctgctttggtgctcaaaccaatc 25548016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 432 - 499
Target Start/End: Complemental strand, 25582810 - 25582743
Alignment:
Q  432 atagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatc 499  Q
    |||||||||| |||||||  ||||||||||||||||||   |||||||||||||||||||||||||||    
T  25582810 atagaagggagttctttatcaaaccagaaagaaattgtctctcccctgctttggtgctcaaaccaatc 25582743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 27607950 - 27607997
Alignment:
Q  191 caacttaaactccacatggatccattcatttttcaaaagtcctttctc 238  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    
T  27607950 caacttaaactccacatggatccattcatttttcaaaagttctttctc 27607997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 191 - 241
Target Start/End: Original strand, 27589947 - 27589997
Alignment:
Q  191 caacttaaactccacatggatccattcatttttcaaaagtcctttctccat 241  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  27589947 caacttaaattccacatggatccattcatttttcaaaagtcctttgtccat 27589997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 432 - 502
Target Start/End: Complemental strand, 28795499 - 28795429
Alignment:
Q  432 atagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 502  Q
    ||||||||||| | ||||| ||||||||| |||||||||  |||||||||||||||||| |||||||||||    
T  28795499 atagaagggatctttttacaaaaccagaaggaaattgtgtctcccctgctttggtgctcgaaccaatctgg 28795429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 422 - 502
Target Start/End: Complemental strand, 26638526 - 26638443
Alignment:
Q  422 aatacaagttatagaagggatttctttacgaaaccagaaagaaattgtg---ggtcccctgctttggtgctcaaaccaatctgg 502  Q
    |||| |||| ||||||||||| | |||||||||||||||||||||||||    ||||||||||||| ||||| |||||||||||    
T  26638526 aatagaagtaatagaagggatctttttacgaaaccagaaagaaattgtgccatgtcccctgctttgatgctcgaaccaatctgg 26638443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 422 - 502
Target Start/End: Complemental strand, 26744492 - 26744409
Alignment:
Q  422 aatacaagttatagaagggatttctttacgaaaccagaaagaaattgtg---ggtcccctgctttggtgctcaaaccaatctgg 502  Q
    |||| |||| ||||||||||| | |||||||||||||||||||||||||    ||||||||||||| ||||| |||||||||||    
T  26744492 aatagaagtaatagaagggatctttttacgaaaccagaaagaaattgtgccatgtcccctgctttgatgctcgaaccaatctgg 26744409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 67 - 136
Target Start/End: Original strand, 27589841 - 27589910
Alignment:
Q  67 tataaggataggtgaataccacattctcctcctccgtgtttttgttctcattccacacgtggattcccat 136  Q
    ||||||||| | | ||||||||||||||||||||||||||  | ||||| ||||||||||||||||||||    
T  27589841 tataaggattgataaataccacattctcctcctccgtgttgcttttctctttccacacgtggattcccat 27589910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 67 - 136
Target Start/End: Original strand, 27607817 - 27607886
Alignment:
Q  67 tataaggataggtgaataccacattctcctcctccgtgtttttgttctcattccacacgtggattcccat 136  Q
    |||||||||  |||||||||||||||| |||||| |||||  | ||||||||||||||||||||||||||    
T  27607817 tataaggatcagtgaataccacattcttctcctctgtgttgcttttctcattccacacgtggattcccat 27607886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 67 - 136
Target Start/End: Original strand, 27674265 - 27674334
Alignment:
Q  67 tataaggataggtgaataccacattctcctcctccgtgtttttgttctcattccacacgtggattcccat 136  Q
    ||||||||| | | ||||||||||||||||||||||||||  | ||||| ||||||||||||||||||||    
T  27674265 tataaggatcgataaataccacattctcctcctccgtgttgcttttctctttccacacgtggattcccat 27674334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 257
Target Start/End: Original strand, 27695403 - 27695464
Alignment:
Q  196 taaactccacatggatccattcatttttcaaaagtcctttctccatgttatacccgtgttgt 257  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||| ||||||  |||||||    
T  27695403 taaactccacatggatccattcacttttcaaaagtcctttgtccatattatacatgtgttgt 27695464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 136
Target Start/End: Original strand, 27715243 - 27715300
Alignment:
Q  79 tgaataccacattctcctcctccgtgtttttgttctcattccacacgtggattcccat 136  Q
    ||||||||||||||||||||||||||||  | ||||||||||||||||||| ||||||    
T  27715243 tgaataccacattctcctcctccgtgttgcttttctcattccacacgtggactcccat 27715300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 25486708 - 25486668
Alignment:
Q  191 caacttaaactccacatggatccattcatttttcaaaagtc 231  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25486708 caacttaaactccacatggatccattcatttttcaaaagtc 25486668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 414 - 502
Target Start/End: Complemental strand, 27074370 - 27074282
Alignment:
Q  414 agaataaaaatacaagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 502  Q
    |||| ||||||||| ||||||| |||||| ||||||| |||||| ||||||||||    |||| ||||| |||||||||||||||||||    
T  27074370 agaagaaaaatacatgttatagtagggatctctttactaaaccaaaaagaaattgcatttcccatgcttcggtgctcaaaccaatctgg 27074282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 192 - 231
Target Start/End: Complemental strand, 26059262 - 26059223
Alignment:
Q  192 aacttaaactccacatggatccattcatttttcaaaagtc 231  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26059262 aacttaaactccacatggatccattcatttttcaaaagtc 26059223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 192 - 231
Target Start/End: Complemental strand, 26079232 - 26079193
Alignment:
Q  192 aacttaaactccacatggatccattcatttttcaaaagtc 231  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26079232 aacttaaactccacatggatccattcatttttcaaaagtc 26079193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 419 - 502
Target Start/End: Complemental strand, 26962220 - 26962137
Alignment:
Q  419 aaaaatacaagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 502  Q
    ||||||||| ||||||| |||||| | ||| ||| |||||||||||| ||||  |||| | |||||||||||||||||||||||    
T  26962220 aaaaatacatgttatagtagggatctttttgcgataccagaaagaaaatgtgtctccctttctttggtgctcaaaccaatctgg 26962137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 191 - 241
Target Start/End: Original strand, 27657544 - 27657594
Alignment:
Q  191 caacttaaactccacatggatccattcatttttcaaaagtcctttctccat 241  Q
    |||||||| ||||||||||||||||||||||||||||||| |||| |||||    
T  27657544 caacttaagctccacatggatccattcatttttcaaaagttctttgtccat 27657594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 422 - 498
Target Start/End: Complemental strand, 31287706 - 31287627
Alignment:
Q  422 aatacaagttatagaagggatttctttacgaaaccagaaagaaattgtg---ggtcccctgctttggtgctcaaaccaat 498  Q
    |||| |||| ||||||||||| | ||||||||||||||||| |||||||    |||||||| ||||||||||||||||||    
T  31287706 aatataagtaatagaagggatctttttacgaaaccagaaagtaattgtgctttgtcccctgatttggtgctcaaaccaat 31287627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 422 - 502
Target Start/End: Complemental strand, 25077132 - 25077052
Alignment:
Q  422 aatacaagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 502  Q
    ||||||||| ||||||||||| | ||| |||||||||||||||||||||  ||||    |||||||||| |||||||||||    
T  25077132 aatacaagtaatagaagggatctttttgcgaaaccagaaagaaattgtgtctccctccatttggtgctcgaaccaatctgg 25077052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 25514201 - 25514161
Alignment:
Q  191 caacttaaactccacatggatccattcatttttcaaaagtc 231  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  25514201 caacttaaactccacatgtatccattcatttttcaaaagtc 25514161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 26146335 - 26146295
Alignment:
Q  191 caacttaaactccacatggatccattcatttttcaaaagtc 231  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  26146335 caacttaaactccacatggatccattcctttttcaaaagtc 26146295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 502
Target Start/End: Complemental strand, 26626246 - 26626168
Alignment:
Q  427 aagttatagaagggatttctttacgaaaccagaaagaaattg---tgggtcccctgctttggtgctcaaaccaatctgg 502  Q
    |||| ||||||||||| | |||||||||||||||||||||||   || |||||||| |||| ||||| |||||||||||    
T  26626246 aagtaatagaagggatctttttacgaaaccagaaagaaattgtgttgtgtcccctgatttgatgctcgaaccaatctgg 26626168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 502
Target Start/End: Complemental strand, 26732223 - 26732145
Alignment:
Q  427 aagttatagaagggatttctttacgaaaccagaaagaaattg---tgggtcccctgctttggtgctcaaaccaatctgg 502  Q
    |||| ||||||||||| | |||||||||||||||||||||||   || |||||||| |||| ||||| |||||||||||    
T  26732223 aagtaatagaagggatctttttacgaaaccagaaagaaattgtgttgtgtcccctgatttgatgctcgaaccaatctgg 26732145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 196 - 231
Target Start/End: Complemental strand, 25583049 - 25583014
Alignment:
Q  196 taaactccacatggatccattcatttttcaaaagtc 231  Q
    ||||||||||||||||||||||||||||||||||||    
T  25583049 taaactccacatggatccattcatttttcaaaagtc 25583014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 432 - 499
Target Start/End: Complemental strand, 26146103 - 26146036
Alignment:
Q  432 atagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatc 499  Q
    |||||||||| || |||| || ||||||||| |||| ||  |||||||||||||||||||||||||||    
T  26146103 atagaagggagttttttatgataccagaaagcaattttgcctcccctgctttggtgctcaaaccaatc 26146036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 433 - 488
Target Start/End: Original strand, 27528708 - 27528763
Alignment:
Q  433 tagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgc 488  Q
    |||||||||| | ||||||||||||||||||||||||| ||||| |||||| ||||    
T  27528708 tagaagggatctttttacgaaaccagaaagaaattgtgtgtcccttgcttttgtgc 27528763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 447 - 502
Target Start/End: Complemental strand, 28246474 - 28246419
Alignment:
Q  447 ttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 502  Q
    ||||||||||| |||||||||||  ||||| |||||||||| ||||||||||||||    
T  28246474 ttacgaaaccaaaaagaaattgtatgtcccatgctttggtgatcaaaccaatctgg 28246419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 191 - 241
Target Start/End: Complemental strand, 26805875 - 26805825
Alignment:
Q  191 caacttaaactccacatggatccattcatttttcaaaagtcctttctccat 241  Q
    |||||||| ||||||||||||||||||||||||| ||||| |||| |||||    
T  26805875 caacttaagctccacatggatccattcatttttcgaaagtactttgtccat 26805825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 422 - 502
Target Start/End: Original strand, 27662413 - 27662496
Alignment:
Q  422 aatacaagttatagaagggatttctttacgaaaccagaaagaaattg---tgggtcccctgctttggtgctcaaaccaatctgg 502  Q
    ||||||||||||||||||||| | |||||  ||||||||||||||||   || ||||||||  ||| ||||| |||||||||||    
T  27662413 aatacaagttatagaagggatctttttacataaccagaaagaaattgagttgtgtcccctgacttgatgctcgaaccaatctgg 27662496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 449 - 502
Target Start/End: Complemental strand, 28142742 - 28142689
Alignment:
Q  449 acgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 502  Q
    |||||||||||||| |||||  |||||| ||||||||||||||||||| |||||    
T  28142742 acgaaaccagaaagtaattgatggtcccttgctttggtgctcaaaccactctgg 28142689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 423 - 502
Target Start/End: Complemental strand, 26649593 - 26649511
Alignment:
Q  423 atacaagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccct---gctttggtgctcaaaccaatctgg 502  Q
    ||||| |||||||||||||| | |||||||||||| ||||||||||||  ||||||   | ||||||| || |||||||||||    
T  26649593 atacatgttatagaagggatatttttacgaaaccaaaaagaaattgtgtctcccctaacgatttggtgttcgaaccaatctgg 26649511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 423 - 502
Target Start/End: Complemental strand, 26755561 - 26755479
Alignment:
Q  423 atacaagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccct---gctttggtgctcaaaccaatctgg 502  Q
    ||||| |||||||||||||| | |||||||||||| ||||||||||||  ||||||   | ||||||| || |||||||||||    
T  26755561 atacatgttatagaagggatatttttacgaaaccaaaaagaaattgtgtctcccctaacgatttggtgttcgaaccaatctgg 26755479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #60
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 106
Target Start/End: Original strand, 27703602 - 27703641
Alignment:
Q  67 tataaggataggtgaataccacattctcctcctccgtgtt 106  Q
    ||||||||| | ||||||||||||||||||||||||||||    
T  27703602 tataaggatcgatgaataccacattctcctcctccgtgtt 27703641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #61
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 502
Target Start/End: Original strand, 2170645 - 2170698
Alignment:
Q  449 acgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 502  Q
    ||||||||||||||||||||  |||||| ||||||| || |||||||| |||||    
T  2170645 acgaaaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctgg 2170698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #62
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 502
Target Start/End: Original strand, 27657793 - 27657862
Alignment:
Q  434 agaagggatttctttacgaaaccagaaagaaattgtgggt-cccctgctttggtgctcaaaccaatctgg 502  Q
    ||||||||| | ||||||||||||||||||||||||   | |||||| ||||||||||  ||||||||||    
T  27657793 agaagggatctttttacgaaaccagaaagaaattgtatctccccctgatttggtgctcgtaccaatctgg 27657862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #63
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 31288064 - 31287995
Alignment:
Q  67 tataaggataggtgaataccacattctcctcctccgtgtttttgttctcattccacacgtggattcccat 136  Q
    |||| |||| |||||||| ||||||||||||||| | ||| || ||||| ||  ||||||||||||||||    
T  31288064 tatatggatcggtgaatatcacattctcctcctctgcgttgtttttctcctttaacacgtggattcccat 31287995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #64
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 487
Target Start/End: Complemental strand, 26876670 - 26876614
Alignment:
Q  431 tatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtg 487  Q
    |||| ||||||| | ||||||||||||||||||||||||  ||||| || |||||||    
T  26876670 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtg 26876614  T

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Target: chr8 (Bit Score: 101; Significance: 8e-50; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 341 - 505
Target Start/End: Original strand, 29270796 - 29270960
Alignment:
Q  341 atctatctcaattttatatccattcacaaaataattgactactgagtcagccaactaattttcgccttctggaagaataaaaatacaagttatagaaggg 440  Q
    |||||||||||||| ||||||||||||| || |||||||| |||| |||  || | |||| | |||||| ||||| |||||||||||||| |||||||||    
T  29270796 atctatctcaatttcatatccattcacacaaaaattgactcctgactcaagcacccaattattgccttccggaagcataaaaatacaagtaatagaaggg 29270895  T
Q  441 atttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtat 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  29270896 atttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgttcgaaccaatctggtat 29270960  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 68 - 165
Target Start/End: Original strand, 29270538 - 29270635
Alignment:
Q  68 ataaggataggtgaataccacattctcctcctccgtgtttttgttctcattccacacgtggattcccatctctacatcactaaatattttattattct 165  Q
    ||||||||  |||||||||||||||||||| ||||||||  | |||||||||||||||||||||||||| |  ||| |||| ||||||||||||||||    
T  29270538 ataaggatctgtgaataccacattctcctcatccgtgttgcttttctcattccacacgtggattcccatttgaacaccacttaatattttattattct 29270635  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 29270670 - 29270717
Alignment:
Q  191 caacttaaactccacatggatccattcatttttcaaaagtcctttctc 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29270670 caacttaaactccacatggatccattcatttttcaaaagtcctttctc 29270717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 423 - 505
Target Start/End: Complemental strand, 16403 - 16321
Alignment:
Q  423 atacaagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtat 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16403 atacaagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtat 16321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 136
Target Start/End: Complemental strand, 16701 - 16644
Alignment:
Q  79 tgaataccacattctcctcctccgtgtttttgttctcattccacacgtggattcccat 136  Q
    ||||||||||||||||||||||||||||  | ||||||||||||||||||| ||||||    
T  16701 tgaataccacattctcctcctccgtgttgcttttctcattccacacgtggactcccat 16644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 191 - 248
Target Start/End: Complemental strand, 16613 - 16557
Alignment:
Q  191 caacttaaactccacatggatccattcatttttcaaaagtcctttctccatgttatac 248  Q
    |||||||||||||||||||||||||||| ||||| |||||||||| ||||| ||||||    
T  16613 caacttaaactccacatggatccattcacttttc-aaagtcctttgtccatattatac 16557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 427 - 502
Target Start/End: Original strand, 17990182 - 17990257
Alignment:
Q  427 aagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 502  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  17990182 aagttatagaagggatttctttacgaaaccagaaagaaattgtgtgccccctgctttggtgctcaaaccaatctgg 17990257  T

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Target: chr1 (Bit Score: 59; Significance: 9e-25; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 411 - 505
Target Start/End: Original strand, 265355 - 265449
Alignment:
Q  411 ggaagaataaaaatacaagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtat 505  Q
    |||||||||| |||| |||| | ||||||||| | |||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||    
T  265355 ggaagaataataataaaagtaacagaagggatctttttacgaaaccagaaagaaattgtgtttcccttgctttggtgctcaaaccaatctggtat 265449  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 192 - 257
Target Start/End: Original strand, 265145 - 265210
Alignment:
Q  192 aacttaaactccacatggatccattcatttttcaaaagtcctttctccatgttatacccgtgttgt 257  Q
    |||||||| |||| |||||||||||||||||||||||||||||| ||||| |||||| ||| ||||    
T  265145 aacttaaattccaaatggatccattcatttttcaaaagtcctttgtccatattatactcgtattgt 265210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 419 - 502
Target Start/End: Complemental strand, 26139110 - 26139027
Alignment:
Q  419 aaaaatacaagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 502  Q
    ||||||| || ||||||||||||||| ||||| ||||||||||||||||||  | |||| |  ||||||||| |||||||||||    
T  26139110 aaaaatagaacttatagaagggatttttttacaaaaccagaaagaaattgtctgccccccggattggtgctcgaaccaatctgg 26139027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 430 - 487
Target Start/End: Original strand, 28129711 - 28129768
Alignment:
Q  430 ttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtg 487  Q
    ||||||||||||||||||||||||||||||||||||  ||  |||||| |||||||||    
T  28129711 ttatagaagggatttctttacgaaaccagaaagaaacagtatgtccccagctttggtg 28129768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 430 - 465
Target Start/End: Original strand, 28124680 - 28124715
Alignment:
Q  430 ttatagaagggatttctttacgaaaccagaaagaaa 465  Q
    ||||||||||||||||||||||||||||||||||||    
T  28124680 ttatagaagggatttctttacgaaaccagaaagaaa 28124715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 26139376 - 26139328
Alignment:
Q  192 aacttaaactccacatggatccattcatttttcaaaagtcctttctcca 240  Q
    ||||||| ||| |||||||||||||||||||| |||||| ||| |||||    
T  26139376 aacttaagctctacatggatccattcattttttaaaagtgcttcctcca 26139328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 433 - 502
Target Start/End: Complemental strand, 10624 - 10555
Alignment:
Q  433 tagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 502  Q
    |||||||||| | |||||||||||||||||||||||||  |||||||||||||||||| |||||||||||    
T  10624 tagaagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctgg 10555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 433 - 502
Target Start/End: Original strand, 1759 - 1828
Alignment:
Q  433 tagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 502  Q
    |||||||||| | |||||||||||||||||||||||||  |||||||||||||||||| |||||||||||    
T  1759 tagaagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctgg 1828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 433 - 502
Target Start/End: Original strand, 10725 - 10794
Alignment:
Q  433 tagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 502  Q
    |||||||||| | |||||||||||||||||||||||||  |||||||||||||||||| |||||||||||    
T  10725 tagaagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctgg 10794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 1524 - 1564
Alignment:
Q  201 tccacatggatccattcatttttcaaaagtcctttctccat 241  Q
    ||||||||||||||||||||||| |||||| |||| |||||    
T  1524 tccacatggatccattcattttttaaaagtgctttttccat 1564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 411 - 502
Target Start/End: Original strand, 18652549 - 18652640
Alignment:
Q  411 ggaagaataaaaatacaagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 502  Q
    |||||||||| |||| |||||||||||||||| | |||||| ||||||||||||||||   | ||||||||||| ||||| |||||||||||    
T  18652549 ggaagaataataatagaagttatagaagggatctttttacggaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctgg 18652640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 411 - 502
Target Start/End: Original strand, 18676631 - 18676722
Alignment:
Q  411 ggaagaataaaaatacaagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 502  Q
    |||||||||| |||| |||||||||||||||| | |||||| ||||||||||||||||   | ||||||||||| ||||| |||||||||||    
T  18676631 ggaagaataataatagaagttatagaagggatctttttacggaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctgg 18676722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 411 - 502
Target Start/End: Original strand, 18721145 - 18721236
Alignment:
Q  411 ggaagaataaaaatacaagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 502  Q
    |||||||||| |||| |||||||||||||||| | |||||  ||||||||||||||||   | ||||||||||||||||| |||||||||||    
T  18721145 ggaagaataataataaaagttatagaagggatctttttacagaaccagaaagaaattgaatgacccctgctttggtgctcgaaccaatctgg 18721236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 411 - 502
Target Start/End: Original strand, 18696480 - 18696571
Alignment:
Q  411 ggaagaataaaaatacaagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 502  Q
    |||||||||| |||| || ||||||||||||| | |||||| ||||||||||||||||   | ||||||||||| ||||| |||||||||||    
T  18696480 ggaagaataataataaaatttatagaagggatctttttacggaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctgg 18696571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 411 - 502
Target Start/End: Original strand, 18728570 - 18728661
Alignment:
Q  411 ggaagaataaaaatacaagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 502  Q
    |||||||||| |||| |||||||||||||||| | |||||  ||||||||||||||||   | ||||||||||| ||||| |||||||||||    
T  18728570 ggaagaataataataaaagttatagaagggatctttttacagaaccagaaagaaattgaatgacccctgctttgatgctcgaaccaatctgg 18728661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 411 - 502
Target Start/End: Original strand, 18686674 - 18686765
Alignment:
Q  411 ggaagaataaaaatacaagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 502  Q
    ||||||||||  ||| |||||||||||||||| | |||||  ||||||||||||||||   | ||||||||||| ||||| |||||||||||    
T  18686674 ggaagaataattatagaagttatagaagggatctttttacagaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctgg 18686765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 18686451 - 18686498
Alignment:
Q  194 cttaaactccacatggatccattcatttttcaaaagtcctttctccat 241  Q
    |||||||||||||| ||||||||||||||| |||||| |||| |||||    
T  18686451 cttaaactccacatagatccattcattttttaaaagtgctttgtccat 18686498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 18696257 - 18696304
Alignment:
Q  194 cttaaactccacatggatccattcatttttcaaaagtcctttctccat 241  Q
    |||||||||||||| ||||||||||||||| |||||| |||| |||||    
T  18696257 cttaaactccacattgatccattcattttttaaaagtgctttgtccat 18696304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 18676409 - 18676458
Alignment:
Q  192 aacttaaactccacatggatccattcatttttcaaaagtcctttctccat 241  Q
    ||||| |||||||||| ||||||||||||||| |||||| |||| |||||    
T  18676409 aacttcaactccacatagatccattcattttttaaaagtgctttgtccat 18676458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 18652350 - 18652386
Alignment:
Q  194 cttaaactccacatggatccattcatttttcaaaagt 230  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  18652350 cttaaactccacatagatccattcattttttaaaagt 18652386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 467
Target Start/End: Original strand, 18700973 - 18701029
Alignment:
Q  411 ggaagaataaaaatacaagttatagaagggatttctttacgaaaccagaaagaaatt 467  Q
    |||||||||| |||| |||||||||| ||||| | |||||  |||||||||||||||    
T  18700973 ggaagaataataatagaagttatagatgggatctttttacagaaccagaaagaaatt 18701029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 447 - 502
Target Start/End: Complemental strand, 46636 - 46581
Alignment:
Q  447 ttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 502  Q
    ||||||||||| |||||||||||  ||||| |||||||||| ||||||||||||||    
T  46636 ttacgaaaccaaaaagaaattgtatgtcccatgctttggtgatcaaaccaatctgg 46581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 502
Target Start/End: Complemental strand, 12616 - 12563
Alignment:
Q  449 acgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 502  Q
    ||||||||||||||||||||  |||||| ||||||| || |||||||| |||||    
T  12616 acgaaaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctgg 12563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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