View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13322_low_4 (Length: 507)
Name: NF13322_low_4
Description: NF13322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13322_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 31769109 - 31769546
Alignment:
| Q |
1 |
ttattaatatgtttagaaagctttaaaagaannnnnnnnnnnagaagaagctttgaaagatattattaataagtttggaaaggtcctatgcaattatgca |
100 |
Q |
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| T |
31769109 |
ttattaatatgtttagaaagctttaaaaga-tttttttttttagaagaagctttgaaagatattattaataagtttagaaaggccctatgcaattatgca |
31769207 |
T |
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| Q |
101 |
tacagcagcttagtactggcggtcccctggtgtaagccttaataatgtatggtgggtgggtttgattttaaaggctgattcttctggtctagtgggggtg |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31769208 |
tacagcagtttagtactggcggtcccctggtgtaagccttaataatgtatggtgggtgggtttgattttaaaggctgattcttctggtctagtgggggtg |
31769307 |
T |
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| Q |
201 |
tcctgtctagtgcccttccaaaattattaatattggtgtcatatcttgctcaccttcacattggacagcttctttttggtgctcatttcagggtcttgtc |
300 |
Q |
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| T |
31769308 |
tcctgtctagtgcccttccaaaattattaatattggtgtcatatcttgctcaccttcacattggacagcttctttttggtgctcatttcagggtcttgtc |
31769407 |
T |
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| Q |
301 |
accaataggggatccacttttgccaaaaatgttatattccaattggtccttattggtgcatacaaaataaatcgtatcaatttgattttctgaaatctta |
400 |
Q |
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| T |
31769408 |
accaataggggatccacttttgccaaaaatgttatattccaattggtccttattggtgcatacaaaataaatcgtatcaatttgattttctgaaatctta |
31769507 |
T |
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| Q |
401 |
aatgtttgccaaatatagtcctatatacacaattcaaat |
439 |
Q |
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| T |
31769508 |
aatgtttgccaaatatagtcctatatacacaattcaaat |
31769546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 448 - 498
Target Start/End: Original strand, 31769532 - 31769582
Alignment:
| Q |
448 |
atacacaattcaaatcttttttggagtgtgtaggcaattacttgatgatgt |
498 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31769532 |
atacacaattcaaatcttttttggagtgtgtaggcaattacttgatgatgt |
31769582 |
T |
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