View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13322_low_5 (Length: 492)

Name: NF13322_low_5
Description: NF13322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13322_low_5
NF13322_low_5
[»] chr5 (28 HSPs)
chr5 (19-477)||(31288505-31288960)
chr5 (33-303)||(31643669-31643938)
chr5 (22-277)||(31284739-31284993)
chr5 (33-168)||(31281466-31281601)
chr5 (33-211)||(31279365-31279543)
chr5 (300-390)||(31332452-31332542)
chr5 (308-391)||(31407101-31407184)
chr5 (302-390)||(31317681-31317769)
chr5 (300-384)||(31381237-31381321)
chr5 (308-391)||(31643559-31643642)
chr5 (312-390)||(31285050-31285128)
chr5 (306-391)||(31279164-31279249)
chr5 (308-390)||(40843003-40843085)
chr5 (302-391)||(31363325-31363414)
chr5 (302-386)||(31330253-31330337)
chr5 (302-386)||(31379035-31379119)
chr5 (302-381)||(31313575-31313654)
chr5 (232-303)||(31395990-31396061)
chr5 (224-303)||(31493921-31494000)
chr5 (308-391)||(31505575-31505658)
chr5 (308-390)||(31281761-31281843)
chr5 (308-390)||(31475621-31475703)
chr5 (22-292)||(31475741-31476010)
chr5 (22-303)||(40843112-40843392)
chr5 (134-201)||(31494022-31494089)
chr5 (156-301)||(31407213-31407357)
chr5 (223-292)||(31281654-31281723)
chr5 (223-292)||(31368794-31368863)
[»] chr3 (2 HSPs)
chr3 (223-303)||(25708659-25708739)
chr3 (306-370)||(25708776-25708840)


Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 19 - 477
Target Start/End: Original strand, 31288505 - 31288960
Alignment:
Q  19 ctattatggtctatgctcttccttcaattatctctctggagactggaatctgttgaagattttcctttacagcgttttcagcatcatcgtcagccctatg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31288505 ctattatggtctatgctcttccttcaattatctctctggagactggaatctgttgaagattttcctttacagcgttgtcagcatcatcgtcagccctatg 31288604  T
Q  119 gttttatttgcaatgatatggcagcactcaagaactattcggttcaaagctcagacagctttcttggtatttacaatcacctcactgtattcannnnnnn 218  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  31288605 gttttatttgcaatgatatggaaacactcaagaactattcggttcaaagctcagacagctttcttggtatttacaatcacctcactgtattcatttttct 31288704  T
Q  219 nnctataaagtagtgaatggaaaaccatatgcatgtagtctcatttgatgtgctgccttcgctgtcatgtcactcagcttgtcgaaattgatcttcttta 318  Q
      | ||||||||||||||  |||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  31288705 t-cgataaagtagtgaat--aaaaccatatgcatatagtctcatttgatgtgtttccttcgctgtcatgtcactcagcttgtcgaaattgatcttcttta 31288801  T
Q  319 ttgtttccttggatgtctaatggtgcaactcttgaagattaaactgcagttattcatttttggagcaggtttccgattaaccatattcacccatgatagg 418  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31288802 ttgtttccttggatgtctaatggtgcaactcttgaagattaaattgcagttattcatttttggagcaggtttccgattaaccatattcacccacgatagg 31288901  T
Q  419 cctaggtgatggtatgggaggatcatcacccatctcttacactcgagtaacgttttgat 477  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  31288902 cctaggtgatggtatgggaggatcatcacccatctcttacacttgagtaatgttttgat 31288960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 33 - 303
Target Start/End: Complemental strand, 31643938 - 31643669
Alignment:
Q  33 gctcttccttcaattatctctctggagactggaatctgttgaagattttcctttacagcgttttcagcatcatcgtcagccctatggttttatttgcaat 132  Q
    ||||||||||||| ||||| | |||||| ||||||||||||||||||||||||||||||||||||||  ||||| ||||||  ||| ||||||||||||     
T  31643938 gctcttccttcaactatctatttggagattggaatctgttgaagattttcctttacagcgttttcagtttcatcatcagcctcatgattttatttgcaaa 31643839  T
Q  133 gatatggcagcactcaagaactattcggttcaaagctcagacagctttcttggtatttacaatcacctcactgtattcannnnnnnnnctataaagtagt 232  Q
     || ||||| | |||||||| |||||| |||||||| || ||||| |  |||||||| |||||||| ||  | ||||||           ||||||| ||    
T  31643838 aatgtggcaaccctcaagaagtattcgattcaaagcacacacagcatatttggtattaacaatcacttcgttatattcatttttcttt-gataaagtggt 31643740  T
Q  233 gaatggaaaaccatatgcatgtagtctcatttgatgtgctgccttcgctgtcatgtcactcagcttgtcga 303  Q
    ||||||||||||| |||||| ||| |||||||  |||||| |||| ||| |||||||||| || |||||||    
T  31643739 gaatggaaaaccagatgcatatagcctcatttcttgtgcttcctttgctatcatgtcacttagtttgtcga 31643669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 22 - 277
Target Start/End: Original strand, 31284739 - 31284993
Alignment:
Q  22 ttatggtctatgctcttccttcaattatctctctggagactggaatctgttgaagattttcctttacagcgttttcagcatcatcgtcagccctatggtt 121  Q
    ||||| |||| ||||||||||||| ||||||| |||||||||||||||| |||||||  |||| |||||| |||||||| ||||| |||||    |||||    
T  31284739 ttatgctctaagctcttccttcaactatctctttggagactggaatctgctgaagataatcctctacagcattttcagcttcatcatcagcttggtggtt 31284838  T
Q  122 ttatttgcaatgatatggcagcactcaagaactattcggttcaaagctcagacagctttcttggtatttacaatcacctcactgtattcannnnnnnnnc 221  Q
    || ||||||| ||| |||||  |||| |||| | ||||||||||||||||  | || || |||||||| |||||||||||| | ||||||              
T  31284839 ttgtttgcaaggatgtggcaaaactcgagaagtcttcggttcaaagctcatgctgcgtttttggtattgacaatcacctcattatattcatttttcttt- 31284937  T
Q  222 tataaagtagtgaatggaaaaccatatgcatgtagtctcatttgatgtgctgcctt 277  Q
     |||||||||| |||||||||||| |||||| ||| ||||||| ||||||| ||||    
T  31284938 gataaagtagttaatggaaaaccagatgcatatagcctcatttcatgtgcttcctt 31284993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 33 - 168
Target Start/End: Original strand, 31281466 - 31281601
Alignment:
Q  33 gctcttccttcaattatctctctggagactggaatctgttgaagattttcctttacagcgttttcagcatcatcgtcagccctatggttttatttgcaat 132  Q
    ||||||||||||||||||||| |||||| |||||| |||||||||||||||||||| ||||||||||| ||||| | |||    | |||||||||||||     
T  31281466 gctcttccttcaattatctctttggagattggaatttgttgaagattttcctttacggcgttttcagcttcatcattagcttggtcgttttatttgcaaa 31281565  T
Q  133 gatatggcagcactcaagaactattcggttcaaagc 168  Q
     |||||||  |||||||||| | |||| ||||||||    
T  31281566 tatatggcgacactcaagaagtcttcgcttcaaagc 31281601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 33 - 211
Target Start/End: Complemental strand, 31279543 - 31279365
Alignment:
Q  33 gctcttccttcaattatctctctggagactggaatctgttgaagattttcctttacagcgttttcagcatcatcgtcagccctatggttttatttgcaat 132  Q
    ||||||||||||| ||||||| |||||| |||||| | |||||||||||||||||| ||||||||||| ||||| | |||    | |||||||||| ||     
T  31279543 gctcttccttcaactatctctttggagaatggaatttcttgaagattttcctttacggcgttttcagcttcatcattagcttggtcgttttatttgtaaa 31279444  T
Q  133 gatatggcagcactcaagaactattcggttcaaagctcagacagctttcttggtatttacaatcacctcactgtattca 211  Q
     |||||||  |||||||||| | |||| |||||||| || ||||| |  |||||||| ||||| ||||| || ||||||    
T  31279443 tatatggcgacactcaagaagtcttcgattcaaagcacacacagcatatttggtattgacaatgacctcgctatattca 31279365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 300 - 390
Target Start/End: Original strand, 31332452 - 31332542
Alignment:
Q  300 tcgaaattgatcttctttattgtttccttggatgtctaatggtgcaactcttgaagattaaactgcagttattcatttttggagcaggttt 390  Q
    ||||||| ||||||||||||| |||||| ||| | ||||| ||||||||| ||||||||||| |||||||||||||| |||||||||||||    
T  31332452 tcgaaatcgatcttctttattttttcctaggaagcctaattgtgcaactcatgaagattaaattgcagttattcattcttggagcaggttt 31332542  T

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Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 308 - 391
Target Start/End: Complemental strand, 31407184 - 31407101
Alignment:
Q  308 gatcttctttattgtttccttggatgtctaatggtgcaactcttgaagattaaactgcagttattcatttttggagcaggtttc 391  Q
    ||||||||||| | ||||||||||||||||||  |||||||| |||||||||||||||| ||| ||||| ||||||||||||||    
T  31407184 gatcttctttactttttccttggatgtctaattatgcaactcatgaagattaaactgcaattagtcattgttggagcaggtttc 31407101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 302 - 390
Target Start/End: Original strand, 31317681 - 31317769
Alignment:
Q  302 gaaattgatcttctttattgtttccttggatgtctaatggtgcaactcttgaagattaaactgcagttattcatttttggagcaggttt 390  Q
    ||||||||||||||||||| |||||| ||||||||||| || |||||| ||||||||||  |||||||||| ||| ||||||| |||||    
T  31317681 gaaattgatcttctttattttttcctgggatgtctaattgttcaactcatgaagattaagttgcagttattaattcttggagctggttt 31317769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 300 - 384
Target Start/End: Original strand, 31381237 - 31381321
Alignment:
Q  300 tcgaaattgatcttctttattgtttccttggatgtctaatggtgcaactcttgaagattaaactgcagttattcatttttggagc 384  Q
    ||||||| ||||||||||||| |||||| ||| | ||||| ||||||||| ||||||||||| |||||||||||||| |||||||    
T  31381237 tcgaaatcgatcttctttattttttcctaggaagcctaattgtgcaactcatgaagattaaattgcagttattcattcttggagc 31381321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 308 - 391
Target Start/End: Complemental strand, 31643642 - 31643559
Alignment:
Q  308 gatcttctttattgtttccttggatgtctaatggtgcaactcttgaagattaaactgcagttattcatttttggagcaggtttc 391  Q
    ||||||||||| | |||||||||||||||||| || |||||| |||||||||||||||  ||||||||| ||||||| ||||||    
T  31643642 gatcttctttactttttccttggatgtctaattgtccaactcatgaagattaaactgcccttattcattcttggagcgggtttc 31643559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 312 - 390
Target Start/End: Original strand, 31285050 - 31285128
Alignment:
Q  312 ttctttattgtttccttggatgtctaatggtgcaactcttgaagattaaactgcagttattcatttttggagcaggttt 390  Q
    ||||||| | ||| || |||||| |||| ||||||||| ||||||||||| |||||||||||||| |||||||||||||    
T  31285050 ttctttacttttttctcggatgtttaattgtgcaactcatgaagattaaattgcagttattcattgttggagcaggttt 31285128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 306 - 391
Target Start/End: Complemental strand, 31279249 - 31279164
Alignment:
Q  306 ttgatcttctttattgtttccttggatgtctaatggtgcaactcttgaagattaaactgcagttattcatttttggagcaggtttc 391  Q
    ||||||||||||| | ||| |||||||||||||| || |||||| ||||||||||||||   ||||||||| ||||||| ||||||    
T  31279249 ttgatcttctttacttttttcttggatgtctaattgtacaactcatgaagattaaactgttattattcattcttggagctggtttc 31279164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 308 - 390
Target Start/End: Complemental strand, 40843085 - 40843003
Alignment:
Q  308 gatcttctttattgtttccttggatgtctaatggtgcaactcttgaagattaaactgcagttattcatttttggagcaggttt 390  Q
    ||||||||||| | ||| |||||||||||||  |||  |||| ||||||||||| | |||||||||||| |||||||||||||    
T  40843085 gatcttctttacttttttcttggatgtctaactgtgttactcatgaagattaaattccagttattcattattggagcaggttt 40843003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 302 - 391
Target Start/End: Original strand, 31363325 - 31363414
Alignment:
Q  302 gaaattgatcttctttattgtttccttggatgtctaatggtgcaactcttgaagattaaactgcagttattcatttttggagcaggtttc 391  Q
    ||||| |||||||||||||   | ||||||||||||||| |||| ||| ||||||||| | || | ||||||||||||||||||| ||||    
T  31363325 gaaatcgatcttctttatttccttcttggatgtctaatgatgcagctcatgaagattacattgaaattattcatttttggagcagttttc 31363414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 386
Target Start/End: Original strand, 31330253 - 31330337
Alignment:
Q  302 gaaattgatcttctttattgtttccttggatgtctaatggtgcaactcttgaagattaaactgcagttattcatttttggagcag 386  Q
    ||||| |||||||| |||| | | || |||||||||||| |||||||| ||||||||||| || | ||||||||| |||||||||    
T  31330253 gaaatcgatcttctatattttcttctaggatgtctaatgatgcaactcatgaagattaaattgaaattattcattcttggagcag 31330337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 386
Target Start/End: Original strand, 31379035 - 31379119
Alignment:
Q  302 gaaattgatcttctttattgtttccttggatgtctaatggtgcaactcttgaagattaaactgcagttattcatttttggagcag 386  Q
    ||||| |||||||| |||| | | || |||||||||||| |||||||| ||||||||||| || | ||||||||| |||||||||    
T  31379035 gaaatcgatcttctatattttcttctaggatgtctaatgatgcaactcatgaagattaaattgaaattattcattcttggagcag 31379119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 302 - 381
Target Start/End: Original strand, 31313575 - 31313654
Alignment:
Q  302 gaaattgatcttctttattgtttccttggatgtctaatggtgcaactcttgaagattaaactgcagttattcatttttgg 381  Q
    ||||| |||||||| |||| | | ||||||||||||||| |||||||| ||||||||| | || | ||||||||||||||    
T  31313575 gaaatcgatcttctatattttcttcttggatgtctaatgatgcaactcatgaagattacattgaaattattcatttttgg 31313654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 232 - 303
Target Start/End: Original strand, 31395990 - 31396061
Alignment:
Q  232 tgaatggaaaaccatatgcatgtagtctcatttgatgtgctgccttcgctgtcatgtcactcagcttgtcga 303  Q
    |||||||||||||| |||||| |||||| |||| ||||||||||||  || | |||||||| ||||||||||    
T  31395990 tgaatggaaaaccagatgcatatagtctaatttcatgtgctgccttttctatgatgtcacttagcttgtcga 31396061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 224 - 303
Target Start/End: Complemental strand, 31494000 - 31493921
Alignment:
Q  224 taaagtagtgaatggaaaaccatatgcatgtagtctcatttgatgtgctgccttcgctgtcatgtcactcagcttgtcga 303  Q
    |||||| ||||||||||||||| |||||| |||||| ||   |||||||||||| ||| ||||||| || ||||||||||    
T  31494000 taaagtggtgaatggaaaaccagatgcatatagtctaataacatgtgctgcctttgctatcatgtcgcttagcttgtcga 31493921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 308 - 391
Target Start/End: Complemental strand, 31505658 - 31505575
Alignment:
Q  308 gatcttctttattgtttccttggatgtctaatggtgcaactcttgaagattaaactgcagttattcatttttggagcaggtttc 391  Q
    ||||||||||| | ||| || |||||| |||| || |||||  ||||||||||| |||||||||||||| ||||||| ||||||    
T  31505658 gatcttctttacttttttctcggatgtttaattgtacaactaatgaagattaaattgcagttattcattgttggagctggtttc 31505575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 390
Target Start/End: Original strand, 31281761 - 31281843
Alignment:
Q  308 gatcttctttattgtttccttggatgtctaatggtgcaactcttgaagattaaactgcagttattcatttttggagcaggttt 390  Q
    |||||||||||   ||| || |||||| |||| ||||||||| ||||| ||||| |||||||||||||| ||||||| |||||    
T  31281761 gatcttctttacatttttctcggatgtttaattgtgcaactcatgaaggttaaattgcagttattcattcttggagctggttt 31281843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 390
Target Start/End: Complemental strand, 31475703 - 31475621
Alignment:
Q  308 gatcttctttattgtttccttggatgtctaatggtgcaactcttgaagattaaactgcagttattcatttttggagcaggttt 390  Q
    ||||||||||| | ||| || ||||||||||  |||  |||| ||||||||||| || ||||||||||| |||||||||||||    
T  31475703 gatcttctttacttttttctcggatgtctaactgtgttactcatgaagattaaattggagttattcattattggagcaggttt 31475621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 292
Target Start/End: Complemental strand, 31476010 - 31475741
Alignment:
Q  22 ttatggtctatgctcttccttcaattatctctctggagactggaatctgttgaagattttcctttacagcgttttcagcatcatcgtcagccctatggtt 121  Q
    ||||| |||| |||||||||| || ||||| | |||| |||||||| ||||||||||  | |||||||  ||||||||  ||||| |  ||   ||| ||    
T  31476010 ttatgctctaagctcttcctttaactatctatttggaaactggaatttgttgaagataattctttacactgttttcagtttcatcatttgcatcatgatt 31475911  T
Q  122 ttatttgcaatgatatggcagcactcaagaactattcggttcaaagctcagacagctttcttggtatttacaatcacctcactgtattcannnnnnnnnc 221  Q
    || | || ||  |||||| | || || |||| | |||||||||||||||| |||||||| || ||||| |||||||||||  | ||||||         |    
T  31475910 ttgtatgaaaatatatggaaacagtctagaagtcttcggttcaaagctcatacagcttttttagtattgacaatcacctctgtctattcattttactt-c 31475812  T
Q  222 tataaagtagtgaatggaaaaccatatgcatgtagtctcatttgatgtgctgccttcgctgtcatgtcact 292  Q
     ||||||| || |||||||||||| |||| | ||| |||||||  ||||||||||| ||| ||||||||||    
T  31475811 gataaagtggtaaatggaaaaccagatgcttatagcctcatttcttgtgctgcctttgctatcatgtcact 31475741  T

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Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 303
Target Start/End: Complemental strand, 40843392 - 40843112
Alignment:
Q  22 ttatggtctatgctcttccttcaattatctctctggagactggaatctgttgaagattttcctttacagcgttttcagcatcatcgtcagccctatggtt 121  Q
    ||||| |||| ||||||||||||| ||||| | |||| | |||||| ||||||||||  | |||||||  ||||||||  ||||| |  ||   ||| ||    
T  40843392 ttatgctctaagctcttccttcaactatctatttggaaattggaatttgttgaagataattctttacactgttttcagtttcatcatttgcatcatgatt 40843293  T
Q  122 ttatttgcaatgatatggcagcactcaagaactattcggttcaaagctcagacagctttcttggtatttacaatcacctcactgtattcannnnnnnnnc 221  Q
    || | || ||  |||||| | || || |||| | |||||||||||||||| |||||||| || ||||| |||||||||||  | |||||          |    
T  40843292 ttgtatgaaaatatatggaaacagtctagaagtcttcggttcaaagctcatacagcttttttagtattgacaatcacctctgtctattc-gttttacttc 40843194  T
Q  222 tataaagtagtgaatggaaaaccatatgcatgtagtctcatttgatgtgctgccttcgctgtcatgtcactcagcttgtcga 303  Q
     ||||||| || |||||||||||| |||| | ||| |||||||  ||||||||||| ||| |||||||||| || |||||||    
T  40843193 gataaagtggtaaatggaaaaccagatgcttatagcctcatttcttgtgctgcctttgctatcatgtcactgagtttgtcga 40843112  T

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Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 201
Target Start/End: Complemental strand, 31494089 - 31494022
Alignment:
Q  134 atatggcagcactcaagaactattcggttcaaagctcagacagctttcttggtatttacaatcacctc 201  Q
    ||||||||  |||||||||   |||||||||||||||| ||||||||  ||||||| |||||||||||    
T  31494089 atatggcaaaactcaagaaggcttcggttcaaagctcatacagcttttctggtattaacaatcacctc 31494022  T

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Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 301
Target Start/End: Complemental strand, 31407357 - 31407213
Alignment:
Q  156 ttcggttcaaagctcagacagctttcttggtatttacaatcacctcactgtattcannnnnnnnnctataaagtagtgaatggaaaaccatatgcatgta 255  Q
    |||||||||||||||| |||||||| || ||||| |||||||||||  | ||||||           ||||||| ||||||||||||||| |||||| ||    
T  31407357 ttcggttcaaagctcatacagcttttttagtattgacaatcacctctgtctattcatttttcttt-gataaagtggtgaatggaaaaccagatgcatata 31407259  T
Q  256 gtctcatttgatgtgctgccttcgctgtcatgtcactcagcttgtc 301  Q
    |  | |||| |||||| ||||| ||| |||||||| | ||||||||    
T  31407258 gcttgatttcatgtgccgcctttgctatcatgtcaatgagcttgtc 31407213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 292
Target Start/End: Original strand, 31281654 - 31281723
Alignment:
Q  223 ataaagtagtgaatggaaaaccatatgcatgtagtctcatttgatgtgctgccttcgctgtcatgtcact 292  Q
    |||||||  |||||||||||||| ||||||  ||||| |||| |||||| ||||| ||| ||||||||||    
T  31281654 ataaagtgatgaatggaaaaccagatgcatacagtctaatttcatgtgccgcctttgctatcatgtcact 31281723  T

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Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 292
Target Start/End: Original strand, 31368794 - 31368863
Alignment:
Q  223 ataaagtagtgaatggaaaaccatatgcatgtagtctcatttgatgtgctgccttcgctgtcatgtcact 292  Q
    |||||||  ||||||| |||||| |||||| |||||| |||| |||||||||||| ||| | ||||||||    
T  31368794 ataaagtcatgaatgggaaaccagatgcatatagtctaatttcatgtgctgcctttgctattatgtcact 31368863  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 303
Target Start/End: Original strand, 25708659 - 25708739
Alignment:
Q  223 ataaagtagtgaatggaaaaccatatgcatgtagtctcatttgatgtgctgccttcgctgtcatgtcactcagcttgtcga 303  Q
    ||||||| |||||||  |||||| |||| | ||| ||||||| |||||||||||| ||| ||||||||||||| |||||||    
T  25708659 ataaagtggtgaatgagaaaccagatgcttatagcctcatttcatgtgctgcctttgctatcatgtcactcagtttgtcga 25708739  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 370
Target Start/End: Original strand, 25708776 - 25708840
Alignment:
Q  306 ttgatcttctttattgtttccttggatgtctaatggtgcaactcttgaagattaaactgcagtta 370  Q
    ||||||||||||||| ||| |||||||||||||| ||||||||| ||||| | ||| ||||||||    
T  25708776 ttgatcttctttatttttttcttggatgtctaattgtgcaactcatgaaggtaaaattgcagtta 25708840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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