View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13322_low_6 (Length: 426)
Name: NF13322_low_6
Description: NF13322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13322_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 23 - 412
Target Start/End: Original strand, 21200716 - 21201109
Alignment:
| Q |
23 |
tgaaaagtatgtacttttaaatttggttgatcctaagctatctgcttcaaacac-atcaagtcgtgtagaattcgcaaaaggaccatcagtatacatggt |
121 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
21200716 |
tgaaaggtatgtacttttaaatttggttgatcctaagctatctgcttcaaacaccatcaagtcgtggagaattcgcaaaaggaccatcagtatacatggt |
21200815 |
T |
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| Q |
122 |
gacagctgacttgactatcgctccattgtcgtccttcactgctatataacatttaaatagttcaaatgtttctctaaatgatgtggaagaaagggttgtt |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21200816 |
gacagctgacttgactatcgctccattgtcgtccttcactgctatatcacatttaaatagttcaaatgtttctctaaatgatgtggaagaaagggttgtt |
21200915 |
T |
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| Q |
222 |
agaattggacggaaggaggtaagcccgccactgcgtaagaccattggcgttttcattctttgcaatgtattttcattaatt----tgcattattacattg |
317 |
Q |
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| T |
21200916 |
agaattggacgaaaggaggtaagcccgccactgcgtaagaccattggcgttttcattctttgcaatgtattttcattaatttgcatgcattactacaatg |
21201015 |
T |
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| Q |
318 |
atttgttttgttaacatattgcagggtctctccattctgaaagcttggatgaactcaacatctgctatgacaaacggactcaaccaactcataac |
412 |
Q |
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| T |
21201016 |
atttg-tttgttaacatattgcagggtctctccattctgaaagcttggatgaactcaacgtctgtcatgacaaacggactcaaccaactcataac |
21201109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 21 - 412
Target Start/End: Original strand, 21195468 - 21195858
Alignment:
| Q |
21 |
gctgaaaagtatgtacttttaaatttggttgatcctaagctatctgcttcaaacacatcaagtcgtgtagaattcgcaaaaggaccatcagtatacatgg |
120 |
Q |
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| T |
21195468 |
gctgaaaagtttgtacttttaaatttggttgatcctaagctatctgcttcaaacgcatcaagtcgtggagaatttgcaaaagggccatcagtatacatgg |
21195567 |
T |
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| Q |
121 |
tgacagctgacttgactatcgctccattgtcgtccttcactgctatataacatttaaatagttcaaatgtttctctaaatgatgtggaagaaagggttgt |
220 |
Q |
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|||||| ||||||| |||| ||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21195568 |
tgacagttgacttggctattactccaatgtcatccttcactgctatatcacatttaaatagttcaaatgtttctctaaatgatgtggaagaaagggttgt |
21195667 |
T |
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| Q |
221 |
tagaattggacggaaggaggtaagcccgccactgcgtaagaccattggcgttttcattctttgcaatgtattttcattaatttgcat----tattacatt |
316 |
Q |
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| T |
21195668 |
tagaattggtcagaaggaggtaagcc----attgtgtaagatcgttggcgttttcattctttgcaatatatttacattaatttgcatgaattattacaat |
21195763 |
T |
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| Q |
317 |
gatttgttttgttaacatattgcagggtctctccattctgaaagcttggatgaactcaacatctgctatgacaaacggactcaaccaactcataac |
412 |
Q |
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| T |
21195764 |
gatttgttt-gttaacatattgcagggtctctgcattctaaaagcttggatgaattcaacgtctggaatgacaaatgggctaaaccaattcataac |
21195858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 36 - 133
Target Start/End: Original strand, 24285240 - 24285337
Alignment:
| Q |
36 |
cttttaaatttggttgatcctaagctatctgcttcaaacacatcaagtcgtgtagaattcgcaaaaggaccatcagtatacatggtgacagctgactt |
133 |
Q |
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| T |
24285240 |
cttttgaattttgttgatcctaagtattctgcttcaaaatcatcaagttgtggagaatttgcaaaaggaccatcagtatacatggttacagatgactt |
24285337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 229
Target Start/End: Original strand, 10989968 - 10990159
Alignment:
| Q |
38 |
tttaaatttggttgatcctaagctatctgcttcaaacacatcaagtcgtgtagaattcgcaaaaggaccatcagtatacatggtgacagctgacttgact |
137 |
Q |
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||||||| |||||||||||||| ||||||||||| | || ||| ||| |||||| || ||||| |||| | |||||||||||||| ||||||| | |
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| T |
10989968 |
tttaaatctggttgatcctaagaactctgcttcaaaatcttccagttgtggagaatttgccaaaggtccattaagatacatggtgacagatgacttggtt |
10990067 |
T |
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| Q |
138 |
atcgctccattgtcgtccttcactgctatataacatttaaatagttcaaatgtttctctaaatgatgtggaagaaagggttgttagaattgg |
229 |
Q |
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| T |
10990068 |
gtgactccaatgtcgtccttcgctgcaatttcacatctgaatagttcaaatattcctgtatctgatgttgaggaaaaggtggttagaattgg |
10990159 |
T |
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