View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13322_low_7 (Length: 418)
Name: NF13322_low_7
Description: NF13322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13322_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 53830073 - 53830367
Alignment:
| Q |
16 |
atcaagcccaaacataatcctcctccttcatctggggatcgtgatatagacatcactggccagtcctatatccagtaataacaacatatatgtaaa-tgc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
53830073 |
atcaagcccaaacataatcctcctccttcatctggggatcgtgatatagacatcactggccagtcctatatccagtaataacaacatatatgtaaaatac |
53830172 |
T |
|
| Q |
115 |
ttagcctaattagtataattaggacgttattttcttatcttaaaatatatatta----ggacgttcatcttttaatttaaggggtcttttttgtttctgt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53830173 |
ttagcctaattagtataattaggacgttattttctgatcttaaaatatatattaattaggacgttcatcttttaatttaaggggtcttttttgtttctgt |
53830272 |
T |
|
| Q |
211 |
tgtcattggtggctgtattttcttttaataagttttcttccatcatttccctcatgtataaactttggtgatccacttcgtaatgttaatgagcg |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
53830273 |
tgtcattggtggctgtattttcttttaataagttttcttccatcatttccctcatgtataaactgtggtgatccacttcgtaatgttaatgagcg |
53830367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University