View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13322_low_8 (Length: 401)
Name: NF13322_low_8
Description: NF13322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13322_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 2400783 - 2400602
Alignment:
| Q |
19 |
tctagtcgaagatcaaggcaacaatcaggtgggtctacacggatttctgatgaccaaattatcgaccttgtttgcaaattgcgtcaacttgttcctgaga |
118 |
Q |
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| T |
2400783 |
tctagtcgaaggtcaaggcaacaatcaggagggtctactcggatctctgatgaccaaatcatcgaccttgtttgcaaattgcgccaacttgttcctgaga |
2400684 |
T |
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| Q |
119 |
ttcgtaataggcaatctgacaaggtactatagctatttcaatcactctatagtatagatacacactattcataaggatgttaaagtt |
205 |
Q |
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| T |
2400683 |
ttcgtaataggcgctctgacaaggtactatagctatttcaatcactct-----atagatacacactattcataaggatgttaaagtt |
2400602 |
T |
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Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 61 - 144
Target Start/End: Complemental strand, 3400556 - 3400473
Alignment:
| Q |
61 |
atttctgatgaccaaattatcgaccttgtttgcaaattgcgtcaacttgttcctgagattcgtaataggcaatctgacaaggta |
144 |
Q |
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| T |
3400556 |
atttctgatgatcaaatcatcgaacttgtttccaagttacgtcaacttgttcctgagattcgtcataggcgttcagacaaggta |
3400473 |
T |
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