View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13323_high_6 (Length: 209)
Name: NF13323_high_6
Description: NF13323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13323_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 127; Significance: 9e-66; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 9 - 182
Target Start/End: Original strand, 38029262 - 38029444
Alignment:
| Q |
9 |
acatcatcaacttctatagtattaaaataataatgtatgaaaaaatgagaccaacat---------attttgttcggattgttaaacggacttcgttccg |
99 |
Q |
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| T |
38029262 |
acatcatcaacttctatagtattaaaataataatgtatgaaaaaatgagaccaacatatggtacatattttgttcggattgttaaacggacttccttcta |
38029361 |
T |
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| Q |
100 |
actctcaaaaagttagctcaaataatgaaaacggtaagtacatataagtggaaggtgtccaagtacatatgaacattacacta |
182 |
Q |
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| T |
38029362 |
actctcaaaaagttagctcaaataatgaaagcggtaaatacatataagaggaaggtgtccaagtacatatgaacattacacta |
38029444 |
T |
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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 107 - 152
Target Start/End: Original strand, 38029478 - 38029523
Alignment:
| Q |
107 |
aaaagttagctcaaataatgaaaacggtaagtacatataagtggaa |
152 |
Q |
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| T |
38029478 |
aaaagttagctcaaataatgaaagcggtaaatgcatataagaggaa |
38029523 |
T |
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