View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13323_low_1 (Length: 1016)
Name: NF13323_low_1
Description: NF13323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13323_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 703; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 703; E-Value: 0
Query Start/End: Original strand, 4 - 722
Target Start/End: Original strand, 55300633 - 55301351
Alignment:
| Q |
4 |
accaccaactcatgattttgttgtctttttaagtccagaagatcaatcactcatggcaacagaaccagaagcaactttggaggaggcgatggtgttgatc |
103 |
Q |
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| T |
55300633 |
accaccaactcatgattttgttgtctttttaagtccagaagatcaatcactcatggtaacagaaccagaagcaactttggaggaggcgatggtgttgatc |
55300732 |
T |
|
| Q |
104 |
catcccgatatccaagggaagcctttgagggttaacaatccgtcatcatcacaagcaactttggagaagatggacgacggtagtgacgatgttgaaggcg |
203 |
Q |
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| T |
55300733 |
catcccgatatccaagggaagcctttgagggttaacaatccgtcatcatcacaagcaactttggagaagatggacgacggtagtgacgatgttgaaggcg |
55300832 |
T |
|
| Q |
204 |
ggaagcctttgagggttaattatgaatcagaaactattccagagaaaacaattttgtgtgacgatgttgtgttgttggttgaagagcataagagaaagca |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55300833 |
ggaagcctttgagggttaattatgaatcagaaactattccagagaaaacaattttgtgtgacgatgttgtgttgttggttgaagagcataagagaaagcc |
55300932 |
T |
|
| Q |
304 |
tttgagggagagagtaacatcaaattcggagacagtattgtcacaacaagaaaatgctgacaaaacagatttgggtatggaggaggagatggaattggtg |
403 |
Q |
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| T |
55300933 |
tttgagggagagagtaacatcaaattcggagacagtattgtcacaacaagaaaatgctgacaaaacagatttgggtatggaggaggagatggaattggtg |
55301032 |
T |
|
| Q |
404 |
atgattgaacaagagaagccattgagagagagtcgtgcgtcacaagttgggaatgagaatgtactaataaatacagagacaacagatttgaaagaggaac |
503 |
Q |
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| T |
55301033 |
atgattgaacaagagaagccattgagagagagtcgtgcgtcacaagttgggaatgagaatgtactaataaatacagagacaacaggtttgaaagaggaac |
55301132 |
T |
|
| Q |
504 |
tcagagacttttggttgggtggtcaaaagactgcttctgaacaaacagtgtcaatggaattaccttgtgagcataagtcgatgaacacggctgaggaagg |
603 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
55301133 |
tcagagacttttggttgggtggtcaaaagactgcttctgaacaaacagtgtcaatggaattaccttgtgagcataagtcgatgaacacggctgtggaagg |
55301232 |
T |
|
| Q |
604 |
aaatatgtatgagtatctgtgggcaaccaaataccagcccaagatattggcagacttcatctgcaacagagataaagcacttcagctgaaagcattggta |
703 |
Q |
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| T |
55301233 |
aaatatgtatgagtatctgtgggcaaccaaataccagcccaagatattggcagacttcatctgcaacagagataaagcacttcagctgaaagcattggta |
55301332 |
T |
|
| Q |
704 |
agaagaatatgatgcttcg |
722 |
Q |
| |
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| T |
55301333 |
agaagaatatgatgcttcg |
55301351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 777 - 999
Target Start/End: Original strand, 55301406 - 55301628
Alignment:
| Q |
777 |
caagatcacaactgcatgcccaacataggtaatataatttcttttgtaattgctgcgtatataggttaaaggtgggtgtggctgtaatcattttatattt |
876 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55301406 |
caagatcacaactgcatgcccaacataggtaatataatttcttttgtaattgctgcgtatataggttaaaggtgggtgtggctgtaatcattttatattt |
55301505 |
T |
|
| Q |
877 |
gaaggacccccaaatgtaggaaagagatccatgatacgggctatgcttcgggaggtatttggcgctgacggagtgcaggtatattcattcatcaatcttg |
976 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55301506 |
gaaggacccccaaatgtaggaaagagatccatgatacgggctatgcttcgggaggtatttggcgctgacggagtgcaggtatattcattcatcaatcttg |
55301605 |
T |
|
| Q |
977 |
tccttgtattctactatttttag |
999 |
Q |
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||||||||||||||||||||||| |
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| T |
55301606 |
tccttgtattctactatttttag |
55301628 |
T |
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Back To:
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