View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13323_low_2 (Length: 466)
Name: NF13323_low_2
Description: NF13323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13323_low_2 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 458; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 49446596 - 49446131
Alignment:
| Q |
1 |
cagcaatttaccggagactctcatttgtcatattctctcttttctccctaccaaacaagctgttgccactagtgtccttgcaaagaggtggatacatcta |
100 |
Q |
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| T |
49446596 |
cagcaatttaccggagactctcatctgtcatattctctcttttctccctaccaaacaagctgttgccactagtgtccttgcaaagaggtggatacatcta |
49446497 |
T |
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| Q |
101 |
tggtgctcagttctcgctatcaacttcagcaacacagagctatatcaccaagaagcctgttttcgcttcagctagtctgtgtattctgttttgctttcac |
200 |
Q |
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| T |
49446496 |
tggtgctcagttctcgctatcaacttcagcaacacagagctatatcaccaagaagcctgttttcgcttcagcgagtctgtgtattctgttttgctttcac |
49446397 |
T |
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| Q |
201 |
gtaattccatcaaaagtttttgccttggcattacatatggtgaggagggcatcattggctttccccatgtcgtcaaatgggtcaaccatgttgtacaaag |
300 |
Q |
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| T |
49446396 |
gtaattccatcaaaagtttttgccttggcattacatatggtgaggagggcatcattggctttccccatgtcgtcaaatgggtcaaccatgttgtacaaag |
49446297 |
T |
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| Q |
301 |
cggagttgagaccattgatctccttgtggatactatgtttggtggtggtcctaaattgcctattagcattctcagctgcaagactcttgttgttctcaaa |
400 |
Q |
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| T |
49446296 |
cggagttgagaccattgatctccttgtggatactatgtttggtggtggtcctaaattgcctattagcattctcagctgcaagactcttgttgttctcaaa |
49446197 |
T |
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| Q |
401 |
tttcagcgtttctctgtgaagggctttacttccattagacttccctgcctcaaaatccttcatctc |
466 |
Q |
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| T |
49446196 |
tttcagcgtttctctgtgaagggctttacttccattagacttccctgcctcaaaatccttcatctc |
49446131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 126
Target Start/End: Complemental strand, 49439080 - 49438983
Alignment:
| Q |
29 |
catattctctcttttctccctaccaaacaagctgttgccactagtgtccttgcaaagaggtggatacatctatggtgctcagttctcgctatcaactt |
126 |
Q |
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| T |
49439080 |
catattctctcttttctcccaaccaaacaggttgttgccactagcgtcctatccaagagatggaagcatcaatggcgctcagttttcgatatcaactt |
49438983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 49427677 - 49427606
Alignment:
| Q |
21 |
tcatttgtcatattctctcttttctccctaccaaacaagctgttgccactagtgtccttgcaaagaggtgga |
92 |
Q |
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| T |
49427677 |
tcatctgtcatattatctcttttctcccaaccgaacaggcggttgccactagtgtcctttcgaagagatgga |
49427606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 461
Target Start/End: Complemental strand, 17642192 - 17642084
Alignment:
| Q |
353 |
aaattgcctattagcattctcagctgcaagactcttgttgttctcaaatttcagcgtttctctgtgaagggctttacttccattagacttccctgcctca |
452 |
Q |
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| T |
17642192 |
aaattgcttgttagcattctaacctgcaggactcttgttgttctcgagttttatgggttcgctgtgaaggggttttctttctttagactcctctccctca |
17642093 |
T |
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| Q |
453 |
aaatccttc |
461 |
Q |
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| T |
17642092 |
aaatccttc |
17642084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 12539873 - 12539910
Alignment:
| Q |
32 |
attctctcttttctccctaccaaacaagctgttgccac |
69 |
Q |
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| T |
12539873 |
attctctcttttctccctaccaaacaatctgctgccac |
12539910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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