View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13323_low_4 (Length: 356)
Name: NF13323_low_4
Description: NF13323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13323_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 23 - 343
Target Start/End: Original strand, 180960 - 181280
Alignment:
| Q |
23 |
taccctccctacccccaatattactttcaaattaaataaggtgctttgtgtcccaaatgctaaacataatctcatatctgttaagaaattctgcaagtct |
122 |
Q |
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||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
180960 |
taccctccctaccccaaatattactttcaaattaaataatgtgctttgtgtcccaaatgctaaacataatctcatatatgttaagaaattctgcaagtct |
181059 |
T |
|
| Q |
123 |
aacaatacatatcttgaatttcaccctacctttttctgtgtgaaggatcaggtcacgggggtgacgttgatgcgcggttcaagtaacagtgatctctaca |
222 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
181060 |
aacaatacatatcttgaattgcaccctacctttttctgtgtgaaggatcaggtcacgggggtgacgttgatgcgcggttccagtaacagtgatctctaca |
181159 |
T |
|
| Q |
223 |
cctttcattatatgtctcaatatcaacccactactcttgcttccacctgctctgcctccccttctatatggcatgctcgtttcgggcatccctctttcag |
322 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
181160 |
cctttcattatatgtctcaatatcaacccactgctcttgcttccacttgctctgcctcaccttctatatggcatgctcgtttcgggcatccctctttcag |
181259 |
T |
|
| Q |
323 |
agttcttgcactgatgatgtc |
343 |
Q |
| |
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|||||||||||| |||||||| |
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| T |
181260 |
agttcttgcactaatgatgtc |
181280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 23 - 343
Target Start/End: Original strand, 1701387 - 1701707
Alignment:
| Q |
23 |
taccctccctacccccaatattactttcaaattaaataaggtgctttgtgtcccaaatgctaaacataatctcatatctgttaagaaattctgcaagtct |
122 |
Q |
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|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1701387 |
taccctccctacccccaatactactttcaaattaaataatgtgctttgtgtcccaaatgctaaacataatctcatatatgttaagaaattctgcaagtct |
1701486 |
T |
|
| Q |
123 |
aacaatacatatcttgaatttcaccctacctttttctgtgtgaaggatcaggtcacgggggtgacgttgatgcgcggttcaagtaacagtgatctctaca |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1701487 |
aacaatacatatcttgaatttcaccctacctttttctgtgtaaaggatcaggtcacgggggcgacgttgatgcgcggttcaagtaacagtgatctctaca |
1701586 |
T |
|
| Q |
223 |
cctttcattatatgtctcaatatcaacccactactcttgcttccacctgctctgcctccccttctatatggcatgctcgtttcgggcatccctctttcag |
322 |
Q |
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|||||||| || ||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
1701587 |
cctttcatcctaagtctcaatatcaacccactgctcttgcttccacctgctccgcctccccttctttatggcatgctcgtttcggtcatccctctttcag |
1701686 |
T |
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| Q |
323 |
agttcttgcactgatgatgtc |
343 |
Q |
| |
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||||||||||| |||||||| |
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| T |
1701687 |
agttcttgcacaaatgatgtc |
1701707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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