View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13323_low_5 (Length: 343)
Name: NF13323_low_5
Description: NF13323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13323_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 11 - 253
Target Start/End: Complemental strand, 29771195 - 29770958
Alignment:
| Q |
11 |
cacagaggagaaaatggggttattataatggagtagttatgaattaggttttctatcaattgtattacatcaccttgatatataatctagaaaacttatg |
110 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29771195 |
cacagaggagaaaatggggttat---aatggagtagttatgaattaggttttctatcaattgtattacatcaccttgatatataatctagaaaacttatg |
29771099 |
T |
|
| Q |
111 |
tgtcttgagatatattacaagacattaattaataaagtactttcttcaaaatataataattaattaagtactataatgtcgtttttaaattaaactattt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
29771098 |
tgtcttgagatatattacaagacattaattaataaagtactttcttcaaaatataataattaattaagtactataatgtcgtttttaaagtaaactactt |
29770999 |
T |
|
| Q |
211 |
atcacaaacaaagcctatccgtttgattaaactattttaaatt |
253 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
29770998 |
atcacaaacaaagcatat--gtttgattaaactattttaaatt |
29770958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 277 - 326
Target Start/End: Complemental strand, 29770929 - 29770881
Alignment:
| Q |
277 |
tagctcataagtttaatgaacttgctcgcaagttagttttgataaaacta |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29770929 |
tagctcataagtttaatgaacttgctcgcaagttag-tttgataaaacta |
29770881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University