View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13323_low_7 (Length: 268)
Name: NF13323_low_7
Description: NF13323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13323_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 4592101 - 4591865
Alignment:
| Q |
16 |
atttccaaaaatacacagcaagttataactagaaaaactaaatagccacaccaaaacagactaaggaggcagcatacaaagagaccaataaatacgattc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4592101 |
atttccaaaaatacacagcaagttataactagaaaaactaaagagccacaccaaaacagactaaggaggcagcatacaaagagaccaataaatacgattc |
4592002 |
T |
|
| Q |
116 |
tacatttcttccaattctttgattttgagtcaaagattattaaatgaaatattttgatgaaaactcctatattccaataacaaattgatacgaaaacaaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4592001 |
tacatttcttccaattctttgattttgagtcaaagattattaaatgaaatattttgatgaaaactcctatattccaataacaaattgatacgaaaacaaa |
4591902 |
T |
|
| Q |
216 |
ttagccactgcgggatgagtaatatgtttgcactatg |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4591901 |
ttagccactgcgggatgagtaatatgtttgcactatg |
4591865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 132 - 247
Target Start/End: Complemental strand, 4555667 - 4555552
Alignment:
| Q |
132 |
ctttgattttgagtcaaagattattaaatgaaatattttgatgaaaactcctatattccaataacaaattgatacgaaaacaaattagccactgcgggat |
231 |
Q |
| |
|
|||||||| |||||||||||||| |||||| || |||||||| | || |||||||| ||||| |||| |||| | |||||||| |||||||| ||||| |
|
|
| T |
4555667 |
ctttgattctgagtcaaagattaataaatgcaaaattttgattagaaatcctatatgccaattacaagttgagaataaaacaaactagccactacgggag |
4555568 |
T |
|
| Q |
232 |
gagtaatatgtttgca |
247 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
4555567 |
gagcaatatgtttgca |
4555552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University