View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13324_high_1 (Length: 212)
Name: NF13324_high_1
Description: NF13324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13324_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 46756000 - 46756190
Alignment:
| Q |
1 |
tgcggctgaaagagaagctttcttataaggtggttagttaactgtttctacatttttatgttcacataacataacatgagggttaaatcgaatgttattt |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
46756000 |
tgcggctgatagagaagctttcttataaggtggttagttaactgtttctacatttttatgttcacat-----aacatgagggttaaatagaatgttattt |
46756094 |
T |
|
| Q |
101 |
catttcgtgattgtcctcgaaggttaaataaagacttgtaatggacaactacataatagtgtggtc--gtttgtacttggagagcatgtattatat |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
46756095 |
catttcgtgattgtcctcgaaggttaaataaagacttgtaatggacaactacataatagtgtggtcgtgtttgtacttggagagcatgtattatat |
46756190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University