View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13324_high_1_N (Length: 522)
Name: NF13324_high_1_N
Description: NF13324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13324_high_1_N |
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Alignment Details
Target: chr3 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 15 - 507
Target Start/End: Complemental strand, 45381911 - 45381416
Alignment:
| Q |
15 |
ccaaatgtgaatcaagtttcatgttatacttatggcaaagaaagcaatgtttgaatattgttgtagacattaatgttggtactaaaactatgaagctaac |
114 |
Q |
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| T |
45381911 |
ccaaatgtgaatcaagtttcatgttatacttatggcaaagaaagcaatgtttgaatattgttgtagacattaatgttggtactaaaactatgaagctaac |
45381812 |
T |
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| Q |
115 |
ctgaagaaaattcatgagtgtctccatggtagcagttctatctggaccaatttcataggacctaataacaaaaatttgcctaaacacaaaccttccttca |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45381811 |
ctgaagaaaattcatgagtgtctccatggtagcagttctatctggaccaatttcataggacctaataacaaaaatctgcctaaacacaaaccttccttca |
45381712 |
T |
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| Q |
215 |
acaaatctcccattggtaacaagagcaacatctgttgtattttc---atttagcaattttttaggagcctctaccacttgtaaaccattcaccttagttc |
311 |
Q |
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| T |
45381711 |
acaaatctcccattggtaacaagagcaacatctgttgtattttcttcatttagcaattttttaggagcctctaccacttgtaaaccattcaccttagttc |
45381612 |
T |
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| Q |
312 |
cattaattgtgtccactttatgaaaagtactaccatgattagaatttgtaatcaccaatgaaaatcttcgtttgttgtggttgttcaatgtgtcattgtt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45381611 |
cattaattgtgtccactttatgaaaagtactaccatgattagaatttgtaatcaccaatgaaaatcttcgtttgttgtggttgttcaatgtgtcattgtt |
45381512 |
T |
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| Q |
412 |
ttgatgagaggaattaaaattcacctccaaaaccttccttgagttgatcatattttccttctttgcattgctcacattccaattcccttgtaagcc |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45381511 |
ttgatgagaggaattaaaattcacctccaaaaccttccttgagttgatcatattttccttctttgcattgctcacattccaattcccttgtaagcc |
45381416 |
T |
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