View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13324_high_4 (Length: 354)
Name: NF13324_high_4
Description: NF13324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13324_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 2318939 - 2319241
Alignment:
| Q |
1 |
gaaatttcatcaaaagcaaatgtaattcgaaacaacaataaatgacatatatattgattagattcgaaacataaagacagacaaacaacataacaatctg |
100 |
Q |
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| T |
2318939 |
gaaatttcatcgaaagcaaatgtaattcgaaacaacaataaatgacatatatattgattagattcgaaacataaagacagacaaacaacataagaatctg |
2319038 |
T |
|
| Q |
101 |
atcttgatagaaaaagaggaagagttaattaattaattaagaaatgaagtatacttgaacttgaggggattcatcggaaggattgtttgtggcggcattg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2319039 |
atcttgatagaaaaagaggaagagttaattaattaattaagaaatgaagtatacttgaacttgaggggattcatcagaaggattgtttgtggcggcattg |
2319138 |
T |
|
| Q |
201 |
atagtggagagagaagaagaaatgttattgatcttcgaagcttctggagaatccatcaagaactgtttcacactcacactcgatccagtcgatttcccta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2319139 |
atagtggagagagaagaagaaatgttattgatcttcgaagcttctggagaatccatcaagaactgtttcacactcacactcgatccagtcgatttcccta |
2319238 |
T |
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| Q |
301 |
taa |
303 |
Q |
| |
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||| |
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| T |
2319239 |
taa |
2319241 |
T |
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