View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13324_high_5 (Length: 351)
Name: NF13324_high_5
Description: NF13324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13324_high_5 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 11 - 351
Target Start/End: Original strand, 24813281 - 24813622
Alignment:
| Q |
11 |
taatactcctacaacaatttcaactatatgtaagatttgatgactcttccataatctcacttacaaaaatatcaaatcttaacaaacaaataaataatag |
110 |
Q |
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| T |
24813281 |
taatactcctacaacaatttcaactatatgtaagatttgatgactcttccataatctcacttacaaaaatatcaaatcttaacaaacaaataaatgatag |
24813380 |
T |
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| Q |
111 |
atactatgaatctttatgatgtgtgaggcacttaagaaaaatagtgataatgaaaataaccttatggttttgttgatgaagtaacatacacaaaaattaa |
210 |
Q |
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| T |
24813381 |
atactatgaatctttatgatgtgtgaggcacttaagaaaaatagtgataatgaaaataaccttatggttttgctgatgaagtaacatacacaaaaattaa |
24813480 |
T |
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| Q |
211 |
gaactttgtgtgtatattccttataagcttataggttgatttgaa-gagaaggagattgaagtatcttccttgtaatgattttgttataatctgaatatt |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24813481 |
gaactttgtgtgtatattccttataagcttataggttgatttgaatgagaaggagattgaagtatcttccttgtaatgattttgttataatctgaatatt |
24813580 |
T |
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| Q |
310 |
taaggaaaatggtgtcttaaactggtccaaaatagcactttt |
351 |
Q |
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| T |
24813581 |
taaggaaaatggtgtcttaaactggtccaaaatagcactttt |
24813622 |
T |
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