View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13324_high_7 (Length: 320)
Name: NF13324_high_7
Description: NF13324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13324_high_7 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 14 - 320
Target Start/End: Original strand, 53127109 - 53127415
Alignment:
| Q |
14 |
aatataatagattttataaccataattgatgactgacaagtttacactgcacctgaagggtggagtgaagtctatttcgataggatccttgtcaactcca |
113 |
Q |
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| T |
53127109 |
aatataatagattttataaccataattgatgactgacaagtttacactgcacctgaagggtggagtgaagtctatttcgataggatccttgtcaactcca |
53127208 |
T |
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| Q |
114 |
tttgaatgatattggattttatagcttccatttgtaagctggtaaacaatacctaattgaaatttgccacgtattgagattaactacaagacatgaagaa |
213 |
Q |
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| T |
53127209 |
tttgaatgatattggattttatagcttccatttgtaagttggtaaacaatacctaattgaaatttgccacgtattgagattaactacatgacattaagaa |
53127308 |
T |
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| Q |
214 |
gataaaaacatgaagataaaatcaaatatagaaatcaatagtccttaattcttaccgctcaacatttcctctgttatcttcatcaggtcatagtaatccg |
313 |
Q |
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| T |
53127309 |
gataaaaacatgaagataaaatcaaatatagaaatcaatagtccttaattcttaccgctcaacatttcctctgttatcttcatcaggtcatagtaatccg |
53127408 |
T |
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| Q |
314 |
caaaagg |
320 |
Q |
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| T |
53127409 |
caaaagg |
53127415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 53114703 - 53114905
Alignment:
| Q |
14 |
aatataatagattttataaccataattgatgactgacaagtttacactgcacctgaagggtggagtgaagtctatttcgataggatccttgtcaactcca |
113 |
Q |
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| T |
53114703 |
aatataatagattttataatctcaattgatgagtgacaaatttagactgcacctgaagggtggagtgaagtctatttcaataggatctttatcaacccca |
53114802 |
T |
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| Q |
114 |
tttgaatgatattggattttatagcttccatttgtaagctggtaaacaatacctaattgaaatttgccacgtattgagattaactacaagacatgaagaa |
213 |
Q |
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| T |
53114803 |
tttgcatgatacttgattttatagcttccatttgtaagttcctgaaccaaacctatttgaaatttgccacatcatgagatta---acaacacatgaagaa |
53114899 |
T |
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| Q |
214 |
gataaa |
219 |
Q |
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|||||| |
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| T |
53114900 |
gataaa |
53114905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 28 - 220
Target Start/End: Original strand, 53109292 - 53109484
Alignment:
| Q |
28 |
tataaccataattgatgactgacaagtttacactgcacctgaagggtggagtgaagtctatttcgataggatccttgtcaactccatttgaatgatattg |
127 |
Q |
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| T |
53109292 |
tataatcacaattgatgactgacaaatttacactgcacctgaaaggtggagtgaagtctatttcaataggatctttatcaaccccatttgcatgatattt |
53109391 |
T |
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| Q |
128 |
gattttatagcttccatttgtaagctggtaaacaatacctaattgaaatttgccacgtattgagattaactacaagacatgaagaagataaaa |
220 |
Q |
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| T |
53109392 |
gattttatagcttccctttgtgagttcgtgaaccatacctatttgaaatttgccatataatgagattaataacatggcctgaagaagataaaa |
53109484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 225 - 304
Target Start/End: Original strand, 53109475 - 53109557
Alignment:
| Q |
225 |
gaagataaaatcaaatatagaaatcaatagtcct---taattcttaccgctcaacatttcctctgttatcttcatcaggtcat |
304 |
Q |
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| T |
53109475 |
gaagataaaatcaaatgtagcaatcaatagaccttaataattcttaccactcaacattttctctgttatccccattaggtcat |
53109557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 302
Target Start/End: Original strand, 53114907 - 53114977
Alignment:
| Q |
235 |
tcaaatatagaaatcaatagtcct---taattcttaccgctcaacatttcctctgttatcttcatcaggtc |
302 |
Q |
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| T |
53114907 |
tcaaatatagcaatcaatagtccttaataattcttaccactcaacattctctctgttatctccattaggtc |
53114977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 151
Target Start/End: Complemental strand, 15839837 - 15839749
Alignment:
| Q |
63 |
cacctgaagggtggagtgaagtctatttcgataggatccttgtcaactccatttgaatgatattggattttatagcttccatttgtaag |
151 |
Q |
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| T |
15839837 |
cacctgaatggtggagtaaagtcgatttcaataggatccttgtcaagaccatctgcatgatacttgattttatagctgccttttgtaag |
15839749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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